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MS016142 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016142
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem II CP43 reaction center protein
Genome locationscaffold9_2:656556..656666
RNA-Seq ExpressionMS016142
SyntenyMS016142
Gene Ontology termsGO:0009767 - photosynthetic electron transport chain (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009521 - photosystem (cellular component)
GO:0042651 - thylakoid membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
InterPro domainsIPR036001 - Photosystem antenna protein-like superfamily
IPR044900 - Photosystem II CP43 reaction centre protein superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ARO91403.1 photosystem II 44 kDa protein [Rhodochaete parvula]1.5e-0467.57Show/hide
Query:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
        P  E +F  ETMRFWDL APWLEPLRGP    DLNK+
Subjt:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
QUE28369.1 PsbC [Pseudoerythrocladia kornmannii]1.5e-0467.57Show/hide
Query:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
        P  E +F  ETMRFWDL APWLEPLRGP    DLNK+
Subjt:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
QUE30075.1 PsbC [Porphyrostromium boryanum]1.5e-0467.57Show/hide
Query:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
        P  E +F  ETMRFWDL APWLEPLRGP    DLNK+
Subjt:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
QUV75432.1 photosystem II CP43 chlorophyll apoprotein [Ormosia fordiana]6.8e-0567.57Show/hide
Query:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
        P  E +F  ETMRFWDLHAPWLEPLRGP    DLN++
Subjt:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
XP_005704990.1 [pt] photosystem II PsbC protein [Galdieria sulphuraria]1.5e-0467.57Show/hide
Query:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
        P  E +F  ETMRFWDL APWLEPLRGP    DLNK+
Subjt:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
TrEMBL top hitse value%identityAlignment
A0A1X9PWJ5 Photosystem II CP43 reaction center protein7.4e-0567.57Show/hide
Query:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
        P  E +F  ETMRFWDL APWLEPLRGP    DLNK+
Subjt:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
A0A220T0Q8 Photosystem II CP43 reaction center protein7.4e-0567.57Show/hide
Query:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
        P  E +F  ETMRFWDL APWLEPLRGP    DLNK+
Subjt:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
A0A3S5WMT5 Photosystem II CP43 reaction center protein (Fragment)7.4e-0564.86Show/hide
Query:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
        PR E +F  ETMRFWDL APW+EPLRGP    D+NK+
Subjt:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
D4NY67 Photosystem II CP43 reaction center protein7.4e-0567.57Show/hide
Query:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
        P  E +F  ETMRFWDL APWLEPLRGP    DLNK+
Subjt:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
E0CP24 F-box domain-containing protein7.4e-0578.57Show/hide
Query:  PRPEKLFLEETMRFWDLHAPWLEPLRGP
        P  E +F  ETMRFWDLHAPWLEPLRGP
Subjt:  PRPEKLFLEETMRFWDLHAPWLEPLRGP
SwissProt top hitse value%identityAlignment
P28254 Photosystem II CP43 reaction center protein2.0e-0767.57Show/hide
Query:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
        P  E +F  ETMRFWDL APWLEPLRGP    DLNK+
Subjt:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
P51356 Photosystem II CP43 reaction center protein5.8e-0764.86Show/hide
Query:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
        P  E +F  ETMRFWDL APW+EPLRGP    DLNK+
Subjt:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
Q19VC6 Photosystem II CP43 reaction center protein4.4e-0767.57Show/hide
Query:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
        P  E +F  ETMRFWDL APWLEPLRGP    DLNK+
Subjt:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
Q1XDD1 Photosystem II CP43 reaction center protein5.8e-0764.86Show/hide
Query:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
        P  E +F  ETMRFWDL APW+EPLRGP    DLNK+
Subjt:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
Q8WI20 Photosystem II CP43 reaction center protein4.4e-0767.57Show/hide
Query:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
        P  E +F  ETMRFWDL APWLEPLRGP    DLNK+
Subjt:  PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV
Arabidopsis top hitse value%identityAlignment
ATCG00280.1 photosystem II reaction center protein C3.5e-0775Show/hide
Query:  PRPEKLFLEETMRFWDLHAPWLEPLRGP
        P  E +F  ETMRFWDL APWLEPLRGP
Subjt:  PRPEKLFLEETMRFWDLHAPWLEPLRGP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCAAGACCGGAGAAGTTATTTTTGGAGGAGACTATGCGTTTTTGGGATCTGCATGCTCCCTGGTTAGAACCACTAAGGGGTCCATACGATTTTCCCGATCTAAATAAAGT
A
mRNA sequenceShow/hide mRNA sequence
CCAAGACCGGAGAAGTTATTTTTGGAGGAGACTATGCGTTTTTGGGATCTGCATGCTCCCTGGTTAGAACCACTAAGGGGTCCATACGATTTTCCCGATCTAAATAAAGT
A
Protein sequenceShow/hide protein sequence
PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV