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MS016145 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016145
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationscaffold9_2:679280..679416
RNA-Seq ExpressionMS016145
SyntenyMS016145
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHM89856.1 RNA polymerase beta subunit [Lagenaria siceraria]7.8e-1182.61Show/hide
Query:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD
        IVPFDERYE EA  KLVFSELYE SKQ ASPW FEP+Y GKSRIFD
Subjt:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD

ALI91060.1 RpoB, partial [Apodytes dimidiata]5.9e-1180.43Show/hide
Query:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD
        I PFDERYEPEA  KLVFSELYE SKQ A+PW FEP+Y GKSRIFD
Subjt:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD

YP_009236272.1 RNA polymerase beta subunit [Gynostemma pentaphyllum]7.8e-1182.61Show/hide
Query:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD
        IVPFDERYE EA  KLVFSELYE SKQ ASPW FEP+Y GKSRIFD
Subjt:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD

YP_009752827.1 RNA polymerase subunit beta [Baijiania yunnanensis]7.8e-1182.61Show/hide
Query:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD
        IVPFDERYE EA  KLVFSELYE SKQ ASPW FEP+Y GKSRIFD
Subjt:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD

YP_009753166.1 RNA polymerase subunit beta [Trichosanthes truncata]7.8e-1182.61Show/hide
Query:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD
        IVPFDERYE EA  KLVFSELYE SKQ ASPW FEP+Y GKSRIFD
Subjt:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD

TrEMBL top hitse value%identityAlignment
A0A0S0ZKY2 DNA-directed RNA polymerase subunit beta (Fragment)2.9e-1180.43Show/hide
Query:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD
        I PFDERYEPEA  KLVFSELYE SKQ A+PW FEP+Y GKSRIFD
Subjt:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD

A0A1X9Q1B9 DNA-directed RNA polymerase subunit beta3.8e-1182.61Show/hide
Query:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD
        IVPFDERYE EA  KLVFSELYE SKQ ASPW FEP+Y GKSRIFD
Subjt:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD

A0A218KG28 DNA-directed RNA polymerase subunit beta3.8e-1182.61Show/hide
Query:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD
        IVPFDERYE EA  KLVFSELYE SKQ ASPW FEP+Y GKSRIFD
Subjt:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD

A0A249RZI0 DNA-directed RNA polymerase subunit beta3.8e-1182.61Show/hide
Query:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD
        IVPFDERYE EA  KLVFSELYE SKQ ASPW FEP+Y GKSRIFD
Subjt:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD

A0A6H0ETN6 DNA-directed RNA polymerase subunit beta3.8e-1182.61Show/hide
Query:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD
        IVPFDERYE EA  KLVFSELYE SKQ ASPW FEP+Y GKSRIFD
Subjt:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD

SwissProt top hitse value%identityAlignment
A4QJA7 DNA-directed RNA polymerase subunit beta6.6e-1378.26Show/hide
Query:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD
        I PFDERYE EA  KLVFSELYE SKQ A+PW FEP+Y GKSRIFD
Subjt:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD

A9LYH7 DNA-directed RNA polymerase subunit beta6.6e-1378.26Show/hide
Query:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD
        I PFDERYE EA  KLVFSELYE SKQ A+PW FEP+Y GKSRIFD
Subjt:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD

Q3V542 DNA-directed RNA polymerase subunit beta6.6e-1378.26Show/hide
Query:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD
        I PFDERYE EA  KLVFSELYE SKQ A+PW FEP+Y GKSRIFD
Subjt:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD

Q4VZP1 DNA-directed RNA polymerase subunit beta1.0e-1382.61Show/hide
Query:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD
        IVPFDERYE EA  KLVFSELYE SKQ ASPW FEP+Y GKSRIFD
Subjt:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD

Q5QA72 DNA-directed RNA polymerase subunit beta6.6e-1378.26Show/hide
Query:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD
        I PFDERYE EA  KLVFSELYE SKQ A+PW FEP+Y GKSRIFD
Subjt:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD

Arabidopsis top hitse value%identityAlignment
ATCG00190.1 RNA polymerase subunit beta4.7e-1478.26Show/hide
Query:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD
        I PFDERYE EA  KLVFSELYE SKQ A+PW FEP+Y GKSRIFD
Subjt:  IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATAGTACCTTTTGATGAGAGATATGAACCAGAGGCTTTTAAACTAGTATTTTCTGAATTATATGAAGTCAGTAAGCAAATAGCGAGTCCATGGACCTTTGAACCCAAGTA
TCTCGGAAAAAGCAGAATATTTGAT
mRNA sequenceShow/hide mRNA sequence
ATAGTACCTTTTGATGAGAGATATGAACCAGAGGCTTTTAAACTAGTATTTTCTGAATTATATGAAGTCAGTAAGCAAATAGCGAGTCCATGGACCTTTGAACCCAAGTA
TCTCGGAAAAAGCAGAATATTTGAT
Protein sequenceShow/hide protein sequence
IVPFDERYEPEAFKLVFSELYEVSKQIASPWTFEPKYLGKSRIFD