CuGenDBv2

Gene ID	MS016147
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribosomal protein L34
Genome location	scaffold9_2:682264..684795
RNA-Seq Expression	MS016147
Synteny	MS016147
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000271 - Ribosomal protein L34 IPR020939 - Ribosomal protein L34, conserved site

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022152693.1 uncharacterized protein LOC111020350 [Momordica charantia]

9.7e-63

98.39

Show/hide

Query:  MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPM
        MASKLLIR GNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGD SSSQEPM
Subjt:  MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPM

Query:  LLFPKRTFQPSIIRRKRNHGFFAR
        LLFPKRTFQPSIIRRKRNHGFFAR
Subjt:  LLFPKRTFQPSIIRRKRNHGFFAR

XP_022955351.1 uncharacterized protein LOC111457406 isoform X1 [Cucurbita moschata]

1.2e-57

84.21

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Query:  MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPM
        MASKLLIRTGNS +NRLRL+ST Q++ IWS Q+LS GHGV+VTPMLFPSVSKHQT+HHLQQND ESLRKLESEG+FFPFGLPSLRFFLPDGD SS+QEPM
Subjt:  MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPM

Query:  LLFPKRTFQPSIIRRKRNHGFFARYFSTAFSAC
        LLFPKRTFQPS IRRKRNHGFFARY S +F AC
Subjt:  LLFPKRTFQPSIIRRKRNHGFFARYFSTAFSAC

XP_022980742.1 uncharacterized protein LOC111480019 isoform X1 [Cucurbita maxima]

2.1e-57

84.21

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Query:  MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPM
        MASKLLIRTGNS +NRLRL+ST Q++ IWS Q+LS GHGV+VTPMLFPSVSKHQT+HHLQQND ESLRKLESEG+FFPFGLPSLRFFLPDGD SS+QEPM
Subjt:  MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPM

Query:  LLFPKRTFQPSIIRRKRNHGFFARYFSTAFSAC
        LLFPKRTFQPS IRRKRNHGFFARY S +F AC
Subjt:  LLFPKRTFQPSIIRRKRNHGFFARYFSTAFSAC

XP_023526191.1 uncharacterized protein LOC111789743 isoform X1 [Cucurbita pepo subsp. pepo]

6.1e-57

83.46

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Query:  MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPM
        MASKLLIRTGNS +NRLRL+ST Q++ IWS Q+LS GHGV+VTPMLFPSVSKHQ +HHLQQND ESLRKLESEG+FFPFGLPSLRFFLPDGD SS+QEPM
Subjt:  MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPM

Query:  LLFPKRTFQPSIIRRKRNHGFFARYFSTAFSAC
        LLFPKRTFQPS IRRKRNHGFFARY S +F AC
Subjt:  LLFPKRTFQPSIIRRKRNHGFFARYFSTAFSAC

XP_038904887.1 uncharacterized protein LOC120091114 isoform X1 [Benincasa hispida]

7.4e-55

88.71

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Query:  MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPM
        MASKLLIRTGNS INRLRL+ST QSHRI S+Q LS+GHGVEVTPMLFPSVSK QT+HHLQQND ESLRKLE EG+FFPFGLPSLRFFLPDGD SS+QEPM
Subjt:  MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPM

Query:  LLFPKRTFQPSIIRRKRNHGFFAR
        LLFPKRTFQPSIIRRKRNHGFFAR
Subjt:  LLFPKRTFQPSIIRRKRNHGFFAR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DFJ1 uncharacterized protein LOC111020350

4.7e-63

98.39

Show/hide

Query:  MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPM
        MASKLLIR GNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGD SSSQEPM
Subjt:  MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPM

Query:  LLFPKRTFQPSIIRRKRNHGFFAR
        LLFPKRTFQPSIIRRKRNHGFFAR
Subjt:  LLFPKRTFQPSIIRRKRNHGFFAR

A0A6J1GTJ1 uncharacterized protein LOC111457406 isoform X1

5.9e-58

84.21

Show/hide

Query:  MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPM
        MASKLLIRTGNS +NRLRL+ST Q++ IWS Q+LS GHGV+VTPMLFPSVSKHQT+HHLQQND ESLRKLESEG+FFPFGLPSLRFFLPDGD SS+QEPM
Subjt:  MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPM

Query:  LLFPKRTFQPSIIRRKRNHGFFARYFSTAFSAC
        LLFPKRTFQPS IRRKRNHGFFARY S +F AC
Subjt:  LLFPKRTFQPSIIRRKRNHGFFARYFSTAFSAC

A0A6J1GTQ0 uncharacterized protein LOC111457406 isoform X2

1.0e-54

86.29

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Query:  MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPM
        MASKLLIRTGNS +NRLRL+ST Q++ IWS Q+LS GHGV+VTPMLFPSVSKHQT+HHLQQND ESLRKLESEG+FFPFGLPSLRFFLPDGD SS+QEPM
Subjt:  MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPM

Query:  LLFPKRTFQPSIIRRKRNHGFFAR
        LLFPKRTFQPS IRRKRNHGFFAR
Subjt:  LLFPKRTFQPSIIRRKRNHGFFAR

A0A6J1IS44 uncharacterized protein LOC111480019 isoform X1

1.0e-57

84.21

Show/hide

Query:  MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPM
        MASKLLIRTGNS +NRLRL+ST Q++ IWS Q+LS GHGV+VTPMLFPSVSKHQT+HHLQQND ESLRKLESEG+FFPFGLPSLRFFLPDGD SS+QEPM
Subjt:  MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPM

Query:  LLFPKRTFQPSIIRRKRNHGFFARYFSTAFSAC
        LLFPKRTFQPS IRRKRNHGFFARY S +F AC
Subjt:  LLFPKRTFQPSIIRRKRNHGFFARYFSTAFSAC

A0A6J1IXD9 uncharacterized protein LOC111480019 isoform X2

1.8e-54

86.29

Show/hide

Query:  MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPM
        MASKLLIRTGNS +NRLRL+ST Q++ IWS Q+LS GHGV+VTPMLFPSVSKHQT+HHLQQND ESLRKLESEG+FFPFGLPSLRFFLPDGD SS+QEPM
Subjt:  MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPM

Query:  LLFPKRTFQPSIIRRKRNHGFFAR
        LLFPKRTFQPS IRRKRNHGFFAR
Subjt:  LLFPKRTFQPSIIRRKRNHGFFAR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G13882.1 Ribosomal protein L34

1.0e-25

52.76

Show/hide

Query:  MASKLLIRTGNSFINRLRLNSTQ---QSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQ
        MA+K LIR+G S +NR     T    Q++   S Q ++   G E+ P  FPS+S  Q+S   + ND  SL++L   G  +P GLPSL FFLP+ D SS  
Subjt:  MASKLLIRTGNSFINRLRLNSTQ---QSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQ

Query:  EPMLLFPKRTFQPSIIRRKRNHGFFAR
        EP+LLFPKRTFQPS IRRKRNHGFFAR
Subjt:  EPMLLFPKRTFQPSIIRRKRNHGFFAR

AT3G13882.2 Ribosomal protein L34

2.3e-17

39.69

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Query:  GVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPD---------------------------------------------GDV
        G E+ P  FPS+S  Q+S   + ND  SL++L   G  +P GLPSL FFLP+                                               V
Subjt:  GVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPD---------------------------------------------GDV

Query:  SSSQEPMLLFPKRTFQPSIIRRKRNHGFFAR
          S EP+LLFPKRTFQPS IRRKRNHGFFAR
Subjt:  SSSQEPMLLFPKRTFQPSIIRRKRNHGFFAR

Sequences

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CDS sequence

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ATGGCGTCCAAGCTTCTGATTCGAACTGGAAATTCTTTCATAAATCGGTTGCGGTTAAATTCCACGCAACAGAGCCACAGGATTTGGAGTCACCAAACTCTGTCCCATGG
CCATGGCGTTGAAGTCACTCCGATGCTATTTCCTTCAGTCTCCAAGCATCAGACCTCTCACCATTTGCAGCAGAATGACATCGAATCCTTGAGGAAGCTCGAATCGGAAG
GCGTTTTCTTCCCTTTTGGTCTTCCGTCCCTCCGGTTCTTCTTGCCAGACGGAGATGTTTCTTCGTCTCAAGAACCAATGCTCCTATTTCCTAAAAGGACTTTTCAACCT
AGCATCATCAGGCGAAAGAGGAATCATGGATTTTTTGCCCGGTATTTCTCCACTGCCTTTTCTGCATGCTTCGGCATGTATATTTTATATGTAATGTTTTTACAA

mRNA sequence

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Protein sequence

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MASKLLIRTGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQQNDIESLRKLESEGVFFPFGLPSLRFFLPDGDVSSSQEPMLLFPKRTFQP
SIIRRKRNHGFFARYFSTAFSACFGMYILYVMFLQ

MS016147 (gene) of Bitter gourd (TR) v1 genome