CuGenDBv2

Gene ID	MS016149
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Genome location	scaffold9_2:697054..697257
RNA-Seq Expression	MS016149
Synteny	MS016149
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

QIT04093.1 Ycf2 protein [Luffa aegyptiaca]

1.4e-27

95.59

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Query:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND
        ILLYLLSCSA SVVQDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG LLGSSRTEKDCSRFDND
Subjt:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND

QJR53001.1 hypothetical protein RF2 [Herpetospermum pedunculosum]

1.4e-27

95.59

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Query:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND
        ILLYLLSCSA SVVQDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG LLGSSRTEKDCSRFDND
Subjt:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND

YP_009752033.1 Ycf2 protein [Cionosicys macranthus]

1.4e-27

95.59

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Query:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND
        ILLYLLSCSA SVVQDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG LLGSSRTEKDCSRFDND
Subjt:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND

YP_009752370.1 Ycf2 protein [Bryonia marmorata]

1.4e-27

95.59

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Query:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND
        ILLYLLSCSA SVVQDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG LLGSSRTEKDCSRFDND
Subjt:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND

YP_010131137.1 hypothetical protein RF2 [Benincasa hispida]

1.4e-27

95.59

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Query:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND
        ILLYLLSCSA SVVQDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG LLGSSRTEKDCSRFDND
Subjt:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND

TrEMBL top hits

e value

%identity

Alignment

A0A343F2F1 Protein Ycf2

6.7e-28

95.59

Show/hide

Query:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND
        ILLYLLSCSA SVVQDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG LLGSSRTEKDCSRFDND
Subjt:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND

A0A6H0ESM3 Protein Ycf2

6.7e-28

95.59

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Query:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND
        ILLYLLSCSA SVVQDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG LLGSSRTEKDCSRFDND
Subjt:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND

A0A6H0ET42 Protein Ycf2

6.7e-28

95.59

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Query:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND
        ILLYLLSCSA SVVQDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG LLGSSRTEKDCSRFDND
Subjt:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND

A0A6H0EV63 Protein Ycf2

6.7e-28

95.59

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Query:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND
        ILLYLLSCSA SVVQDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG LLGSSRTEKDCSRFDND
Subjt:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND

A0A6M3RUH1 Protein Ycf2

6.7e-28

95.59

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Query:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND
        ILLYLLSCSA SVVQDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG LLGSSRTEKDCSRFDND
Subjt:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND

SwissProt top hits

e value

%identity

Alignment

P09976 Protein Ycf2

2.6e-29

91.18

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Query:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND
        ILLYLLSCSA SV QDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG L+GSSRTEKDCS+FDND
Subjt:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND

Q33BV3 Protein Ycf2

2.6e-29

91.18

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Query:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND
        ILLYLLSCSA SV QDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG L+GSSRTEKDCS+FDND
Subjt:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND

Q3C1N4 Protein Ycf2

2.6e-29

91.18

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Query:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND
        ILLYLLSCSA SV QDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG L+GSSRTEKDCS+FDND
Subjt:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND

Q8S8U1 Protein Ycf2 B

2.6e-29

91.18

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Query:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND
        ILLYLLSCSA SV QDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG L+GSSRTEKDCS+FDND
Subjt:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND

Q8S8V2 Protein Ycf2 A

2.6e-29

91.18

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Query:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND
        ILLYLLSCSA SV QDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG L+GSSRTEKDCS+FDND
Subjt:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

1.5e-27

85.29

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Query:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND
        ILLYLLSCSA SV QDLWSL  PDEKN ITSYG VENDSDLVHGLLEV+G L+GSSRTEKDCS+FDND
Subjt:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

1.5e-27

85.29

Show/hide

Query:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND
        ILLYLLSCSA SV QDLWSL  PDEKN ITSYG VENDSDLVHGLLEV+G L+GSSRTEKDCS+FDND
Subjt:  ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND

Sequences

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CDS sequence

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ATACTTCTTTATCTTTTGAGTTGTTCTGCCAGATCGGTCGTTCAAGACCTTTGGTCTCTACTCGGACCCGATGAAAAAAATGGAATCACTTCTTATGGACTCGTTGAGAA
TGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCACTCTGTTGGGATCTTCACGGACAGAAAAAGATTGCAGTCGATTTGATAATGAT

mRNA sequence

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Protein sequence

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ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND

MS016149 (gene) of Bitter gourd (TR) v1 genome