CuGenDBv2

Gene ID	MS016170
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	autophagy-related protein 13b
Genome location	scaffold9_2:856752..857163
RNA-Seq Expression	MS016170
Synteny	MS016170
Gene Ontology terms	GO:0000045 - autophagosome assembly (biological process) GO:1990316 - Atg1/ULK1 kinase complex (cellular component)
InterPro domains	IPR018731 - Autophagy-related protein 13, N-terminal IPR036570 - HORMA domain superfamily IPR040182 - Autophagy-related protein 13

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004148643.1 autophagy-related protein 13b [Cucumis sativus]

4.0e-50

72.39

Show/hide

Query:  MASSHNTHSETAKTDQILT---AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVDVILV
        MASSHNTHSETAK +QILT    KTLQI+LESR+PCISSRNFSGEQVLSSPSSS                 +RECSA LENIDLWR +YHE MVVDVILV
Subjt:  MASSHNTHSETAKTDQILT---AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVDVILV

Query:  ------DSVNASPRKDLVRNLSLKEKYSL-FNCDKDEFGCDTKSEKIVERWMVHYETIKNRDS
              DSV+ASPRKDLVRNLSLKEKY L FN DKDEFG  TKSEK+VERWMVHYE+ KNRDS
Subjt:  ------DSVNASPRKDLVRNLSLKEKYSL-FNCDKDEFGCDTKSEKIVERWMVHYETIKNRDS

XP_008441017.1 PREDICTED: autophagy-related protein 13b isoform X1 [Cucumis melo]

4.0e-50

72.39

Show/hide

Query:  MASSHNTHSETAKTDQILT---AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVDVILV
        MASSHNTHSETAK +QILT    KTLQI+LESR+PCISSRNFSGEQVLSSPSSS                 +RECSA LENIDLWR +YHE MVVDVILV
Subjt:  MASSHNTHSETAKTDQILT---AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVDVILV

Query:  ------DSVNASPRKDLVRNLSLKEKYSL-FNCDKDEFGCDTKSEKIVERWMVHYETIKNRDS
              DSVNASPRKDLVR+LSLKEKY L FN DKDEFG  TKSEK+VERWMVHYE+ KNRDS
Subjt:  ------DSVNASPRKDLVRNLSLKEKYSL-FNCDKDEFGCDTKSEKIVERWMVHYETIKNRDS

XP_008441018.1 PREDICTED: autophagy-related protein 13b isoform X2 [Cucumis melo]

4.0e-50

72.39

Show/hide

Query:  MASSHNTHSETAKTDQILT---AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVDVILV
        MASSHNTHSETAK +QILT    KTLQI+LESR+PCISSRNFSGEQVLSSPSSS                 +RECSA LENIDLWR +YHE MVVDVILV
Subjt:  MASSHNTHSETAKTDQILT---AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVDVILV

Query:  ------DSVNASPRKDLVRNLSLKEKYSL-FNCDKDEFGCDTKSEKIVERWMVHYETIKNRDS
              DSVNASPRKDLVR+LSLKEKY L FN DKDEFG  TKSEK+VERWMVHYE+ KNRDS
Subjt:  ------DSVNASPRKDLVRNLSLKEKYSL-FNCDKDEFGCDTKSEKIVERWMVHYETIKNRDS

XP_022132934.1 autophagy-related protein 13b [Momordica charantia]

6.3e-56

79.01

Show/hide

Query:  MASSHNTHSETAKTDQILT---AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVDVILV
        MASSHNTHSETAKT+QILT   AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS                 +RECSAALENIDLWRQSYHE MVVDVILV
Subjt:  MASSHNTHSETAKTDQILT---AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVDVILV

Query:  ------DSVNASPRKDLVRNLSLKEKYSL-FNCDKDEFGCDTKSEKIVERWMVHYETIKNRD
              DSVNASPRKDLVRNLSLK+KYSL FN DKDEFGCDTKSEK+VERWMVHYET KNRD
Subjt:  ------DSVNASPRKDLVRNLSLKEKYSL-FNCDKDEFGCDTKSEKIVERWMVHYETIKNRD

XP_038882060.1 autophagy-related protein 13b [Benincasa hispida]

2.1e-51

73.01

Show/hide

Query:  MASSHNTHSETAKTDQILT---AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVDVILV
        MASSHNTHSETAK +QILT    KTLQI+LESR+PCISSRNFSGEQVLSSPSSS                 +RECSA LENIDLWR SYHE MVVDVILV
Subjt:  MASSHNTHSETAKTDQILT---AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVDVILV

Query:  ------DSVNASPRKDLVRNLSLKEKYSL-FNCDKDEFGCDTKSEKIVERWMVHYETIKNRDS
              DSVNASPRKDLVRN SLKEKY L FN DKDEFGC TKSEK++ERWMVHYE+ KNRDS
Subjt:  ------DSVNASPRKDLVRNLSLKEKYSL-FNCDKDEFGCDTKSEKIVERWMVHYETIKNRDS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KFR2 ATG13 domain-containing protein

1.9e-50

72.39

Show/hide

Query:  MASSHNTHSETAKTDQILT---AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVDVILV
        MASSHNTHSETAK +QILT    KTLQI+LESR+PCISSRNFSGEQVLSSPSSS                 +RECSA LENIDLWR +YHE MVVDVILV
Subjt:  MASSHNTHSETAKTDQILT---AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVDVILV

Query:  ------DSVNASPRKDLVRNLSLKEKYSL-FNCDKDEFGCDTKSEKIVERWMVHYETIKNRDS
              DSV+ASPRKDLVRNLSLKEKY L FN DKDEFG  TKSEK+VERWMVHYE+ KNRDS
Subjt:  ------DSVNASPRKDLVRNLSLKEKYSL-FNCDKDEFGCDTKSEKIVERWMVHYETIKNRDS

A0A1S3B2G3 autophagy-related protein 13b isoform X1

1.9e-50

72.39

Show/hide

Query:  MASSHNTHSETAKTDQILT---AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVDVILV
        MASSHNTHSETAK +QILT    KTLQI+LESR+PCISSRNFSGEQVLSSPSSS                 +RECSA LENIDLWR +YHE MVVDVILV
Subjt:  MASSHNTHSETAKTDQILT---AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVDVILV

Query:  ------DSVNASPRKDLVRNLSLKEKYSL-FNCDKDEFGCDTKSEKIVERWMVHYETIKNRDS
              DSVNASPRKDLVR+LSLKEKY L FN DKDEFG  TKSEK+VERWMVHYE+ KNRDS
Subjt:  ------DSVNASPRKDLVRNLSLKEKYSL-FNCDKDEFGCDTKSEKIVERWMVHYETIKNRDS

A0A1S3B343 autophagy-related protein 13b isoform X2

1.9e-50

72.39

Show/hide

Query:  MASSHNTHSETAKTDQILT---AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVDVILV
        MASSHNTHSETAK +QILT    KTLQI+LESR+PCISSRNFSGEQVLSSPSSS                 +RECSA LENIDLWR +YHE MVVDVILV
Subjt:  MASSHNTHSETAKTDQILT---AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVDVILV

Query:  ------DSVNASPRKDLVRNLSLKEKYSL-FNCDKDEFGCDTKSEKIVERWMVHYETIKNRDS
              DSVNASPRKDLVR+LSLKEKY L FN DKDEFG  TKSEK+VERWMVHYE+ KNRDS
Subjt:  ------DSVNASPRKDLVRNLSLKEKYSL-FNCDKDEFGCDTKSEKIVERWMVHYETIKNRDS

A0A6J1BUH2 autophagy-related protein 13b

3.0e-56

79.01

Show/hide

Query:  MASSHNTHSETAKTDQILT---AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVDVILV
        MASSHNTHSETAKT+QILT   AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS                 +RECSAALENIDLWRQSYHE MVVDVILV
Subjt:  MASSHNTHSETAKTDQILT---AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVDVILV

Query:  ------DSVNASPRKDLVRNLSLKEKYSL-FNCDKDEFGCDTKSEKIVERWMVHYETIKNRD
              DSVNASPRKDLVRNLSLK+KYSL FN DKDEFGCDTKSEK+VERWMVHYET KNRD
Subjt:  ------DSVNASPRKDLVRNLSLKEKYSL-FNCDKDEFGCDTKSEKIVERWMVHYETIKNRD

A0A6J1IKL7 autophagy-related protein 13b

6.2e-49

69.33

Show/hide

Query:  MASSHNTHSETAKTDQILT---AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVDVILV
        MASSHNTHSETAK +QILT    KTLQI+LESRSPCISSRNFSG+QVL SPSSS                 +RECSA LENIDLWR SYHE MV+DVILV
Subjt:  MASSHNTHSETAKTDQILT---AKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVDVILV

Query:  ------DSVNASPRKDLVRNLSLKEKYSL-FNCDKDEFGCDTKSEKIVERWMVHYETIKNRDS
              DSVNASPR+DLVRNLSLKEK+    N DK+EFGC TKSEK+VERWMVHYE+ KNRD+
Subjt:  ------DSVNASPRKDLVRNLSLKEKYSL-FNCDKDEFGCDTKSEKIVERWMVHYETIKNRDS

SwissProt top hits

e value

%identity

Alignment

F4J8V5 Autophagy-related protein 13b

1.7e-27

46.63

Show/hide

Query:  MASSH----NTHSETAKTDQIL---TAKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVD
        M+SSH    N +SE AK +QI+    AK+L I+LESR+P +SSRNFSGEQ++ SPSSS                 +REC AALE+ D+ R+S  E +VVD
Subjt:  MASSH----NTHSETAKTDQIL---TAKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVD

Query:  VILVDSV---NASPRKDLVRNLSLKEKYSLFNCDKDEFGCDTKSEKIVERWMVHYETIKNRDS
        V+LV      + S +++L+RN S K+  S +N D+DE GC+TK+E+I+ERW+V Y+  K R+S
Subjt:  VILVDSV---NASPRKDLVRNLSLKEKYSLFNCDKDEFGCDTKSEKIVERWMVHYETIKNRDS

Arabidopsis top hits

e value

%identity

Alignment

AT3G18770.1 Autophagy-related protein 13

1.2e-28

46.63

Show/hide

Query:  MASSH----NTHSETAKTDQIL---TAKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVD
        M+SSH    N +SE AK +QI+    AK+L I+LESR+P +SSRNFSGEQ++ SPSSS                 +REC AALE+ D+ R+S  E +VVD
Subjt:  MASSH----NTHSETAKTDQIL---TAKTLQIVLESRSPCISSRNFSGEQVLSSPSSS-----------------VRECSAALENIDLWRQSYHETMVVD

Query:  VILVDSV---NASPRKDLVRNLSLKEKYSLFNCDKDEFGCDTKSEKIVERWMVHYETIKNRDS
        V+LV      + S +++L+RN S K+  S +N D+DE GC+TK+E+I+ERW+V Y+  K R+S
Subjt:  VILVDSV---NASPRKDLVRNLSLKEKYSLFNCDKDEFGCDTKSEKIVERWMVHYETIKNRDS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTTCTTCTCACAATACTCATTCCGAGACTGCAAAAACCGACCAAATTCTAACTGCTAAAACGCTACAAATTGTACTGGAATCGAGGTCCCCTTGTATCTCGTCGCG
TAATTTCAGTGGGGAACAAGTTTTGTCGTCTCCATCTTCCTCCGTTCGTGAATGCTCTGCAGCGTTAGAGAACATTGATCTCTGGCGTCAGAGCTACCACGAAACCATGG
TGGTAGATGTTATTTTGGTTGACTCAGTGAATGCTTCTCCTAGAAAAGATCTTGTTAGGAACTTGTCTCTGAAAGAGAAATATTCACTCTTCAATTGTGATAAGGACGAG
TTTGGATGTGATACCAAGAGCGAGAAGATTGTAGAAAGATGGATGGTGCATTATGAAACTATAAAAAACAGGGATAGC

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MASSHNTHSETAKTDQILTAKTLQIVLESRSPCISSRNFSGEQVLSSPSSSVRECSAALENIDLWRQSYHETMVVDVILVDSVNASPRKDLVRNLSLKEKYSLFNCDKDE
FGCDTKSEKIVERWMVHYETIKNRDS

MS016170 (gene) of Bitter gourd (TR) v1 genome