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MS016192 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016192
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGlutamate--tRNA ligase
Genome locationscaffold9_2:989815..990168
RNA-Seq ExpressionMS016192
SyntenyMS016192
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058525.1 putative transmembrane protein [Cucumis melo var. makuwa]6.1e-2364.6Show/hide
Query:  MDMDTSQRPLAMALALASALLLSPLRSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRGEGASAIL-SSHSSWVLKIGTSSWGLAGTLVMLILL
        ++ ++S RPLA+ LALASA+ LSPLRS+E+  SSGFV+P++L+GL+IAIKTSS  SS+S         SAIL S H SWVLKIG+SSWGLAG L+MLIL 
Subjt:  MDMDTSQRPLAMALALASALLLSPLRSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRGEGASAIL-SSHSSWVLKIGTSSWGLAGTLVMLILL

Query:  LYWQNSVQEFLWR
        L WQ+SVQEFLWR
Subjt:  LYWQNSVQEFLWR

KAE8637311.1 hypothetical protein CSA_023553, partial [Cucumis sativus]2.5e-2462.9Show/hide
Query:  PKTMD--------MDTSQRPLAMALALASALLLSPLRSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRGEGASAIL-SSHSSWVLKIGTSSWG
        PK MD         ++SQRPLA+ LALASA++LSPLRS+E+  SSGFV+P++L+GL++AIKTSSS SS+S         SAIL S H SWVLKIG+SSWG
Subjt:  PKTMD--------MDTSQRPLAMALALASALLLSPLRSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRGEGASAIL-SSHSSWVLKIGTSSWG

Query:  LAGTLVMLILLLYWQNSVQEFLWR
        LAG L+MLIL L WQ+SVQEFLWR
Subjt:  LAGTLVMLILLLYWQNSVQEFLWR

KAF9689978.1 hypothetical protein SADUNF_Sadunf01G0148300 [Salix dunnii]8.0e-2363.16Show/hide
Query:  TSQRPLAMALALASALLLSPL------RSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRGEGASAILSSHSSWVLKIGTSSWGLAGTLVMLIL
        +SQR LAM LALASA++LSPL       ++E+  SSGFVLPM+L GL+IAI+T    +SSSMS HRG+ AS I S   SWVL+IG+SSWGLAG LVML+L
Subjt:  TSQRPLAMALALASALLLSPL------RSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRGEGASAILSSHSSWVLKIGTSSWGLAGTLVMLIL

Query:  LLYWQNSVQEFLWR
        +L WQ+SVQEF WR
Subjt:  LLYWQNSVQEFLWR

KAG5229029.1 transcription initiation factor TFIID [Salix suchowensis]4.0e-2262.28Show/hide
Query:  TSQRPLAMALALASALLLSPL------RSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRGEGASAILSSHSSWVLKIGTSSWGLAGTLVMLIL
        +SQR LAMALALASA++LSPL       ++E+  +SGFVLPM+L GL+IAI+T    +SSSMS H G+ AS I S   SWVL+IG+SSWGLAG LVML+L
Subjt:  TSQRPLAMALALASALLLSPL------RSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRGEGASAILSSHSSWVLKIGTSSWGLAGTLVMLIL

Query:  LLYWQNSVQEFLWR
        +L WQ+SVQEF WR
Subjt:  LLYWQNSVQEFLWR

KAG6581812.1 hypothetical protein SDJN03_21814, partial [Cucurbita argyrosperma subsp. sororia]2.2e-2571.3Show/hide
Query:  TSQRPLAMALALASALLLSPLRSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRGEGASAILSSHSSWVLKIGTSSWGLAGTLVMLILLLYWQN
        +SQRPLA+ LALASA++LSPLR +ES  SSGFVLP++L+ L+IAIKT  SSS SSMST R E  SAILSS  SWVLKIG+SSWGLAG L+MLI  L WQ+
Subjt:  TSQRPLAMALALASALLLSPLRSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRGEGASAILSSHSSWVLKIGTSSWGLAGTLVMLILLLYWQN

Query:  SVQEFLWR
        SV+EFLWR
Subjt:  SVQEFLWR

TrEMBL top hitse value%identityAlignment
A0A0A0LEN3 Uncharacterized protein2.0e-2466.07Show/hide
Query:  DMDTSQRPLAMALALASALLLSPLRSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRGEGASAIL-SSHSSWVLKIGTSSWGLAGTLVMLILLL
        + ++SQRPLA+ LALASA++LSPLRS+E+  SSGFV+P++L+GL++AIKTSSS SS+S         SAIL S H SWVLKIG+SSWGLAG L+MLIL L
Subjt:  DMDTSQRPLAMALALASALLLSPLRSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRGEGASAIL-SSHSSWVLKIGTSSWGLAGTLVMLILLL

Query:  YWQNSVQEFLWR
         WQ+SVQEFLWR
Subjt:  YWQNSVQEFLWR

A0A540KTD7 Uncharacterized protein9.5e-2257.48Show/hide
Query:  PKTMDMDTSQRPLAMALALASALLLSPL----------RSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRG--EGASAILSSHSSWVLKIGTS
        P T    +SQR +AM LAL SA++LSP+          R  E+  SSGFVLPM+L GL+IAIKT+SSSSSSS +T      G S+I SS  SWVL+IG+S
Subjt:  PKTMDMDTSQRPLAMALALASALLLSPL----------RSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRG--EGASAILSSHSSWVLKIGTS

Query:  SWGLAGTLVMLILLLYWQNSVQEFLWR
        SWGLAG LVML+ +L WQ SV EFLWR
Subjt:  SWGLAGTLVMLILLLYWQNSVQEFLWR

A0A5A7UY99 Putative transmembrane protein3.0e-2364.6Show/hide
Query:  MDMDTSQRPLAMALALASALLLSPLRSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRGEGASAIL-SSHSSWVLKIGTSSWGLAGTLVMLILL
        ++ ++S RPLA+ LALASA+ LSPLRS+E+  SSGFV+P++L+GL+IAIKTSS  SS+S         SAIL S H SWVLKIG+SSWGLAG L+MLIL 
Subjt:  MDMDTSQRPLAMALALASALLLSPLRSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRGEGASAIL-SSHSSWVLKIGTSSWGLAGTLVMLILL

Query:  LYWQNSVQEFLWR
        L WQ+SVQEFLWR
Subjt:  LYWQNSVQEFLWR

A0A6N2MX54 Uncharacterized protein7.3e-2263.25Show/hide
Query:  TMDMDTSQRPLAMALALASALLLSPL----RSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRGEGASAILSSHSSWVLKIGTSSWGLAGTLVM
        T   ++SQR LAM LALASA++LSPL    R+ E+  SSGFVLPM+L GLVIAI+T    +SSSMS  RG  AS I S   SWVL+IG+SSWGLAG LVM
Subjt:  TMDMDTSQRPLAMALALASALLLSPL----RSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRGEGASAILSSHSSWVLKIGTSSWGLAGTLVM

Query:  LILLLYWQNSVQEFLWR
        L L+L WQ+SVQEF WR
Subjt:  LILLLYWQNSVQEFLWR

B9GKT9 Uncharacterized protein2.5e-2259.17Show/hide
Query:  DTSQRPLAMALALASALLLSPL-------------RSFESSSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRGEGASAILSSHSSWVLKIGTSSWGLAGT
        ++SQR LAM LALASA++LSPL                + SSGFVLPM+L GL+IAI+T    +SSSMS HRG  AS I S   SWVL+IG+SSWGLAG 
Subjt:  DTSQRPLAMALALASALLLSPL-------------RSFESSSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRGEGASAILSSHSSWVLKIGTSSWGLAGT

Query:  LVMLILLLYWQNSVQEFLWR
        LVML+L+L WQ+SVQEF WR
Subjt:  LVMLILLLYWQNSVQEFLWR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCTGCTCAACAAAACCCAAAACCATGGACATGGATACGTCTCAGAGACCACTGGCCATGGCTTTGGCTCTTGCTTCTGCACTGCTGCTTTCTCCATTGAGATCCTTCGA
AAGCAGCTCTGGATTTGTTCTTCCAATGCTTCTTATGGGGCTTGTAATTGCCATTAAGACGTCTTCATCTTCCTCTTCCTCATCCATGTCCACGCACAGAGGGGAGGGAG
CTTCTGCAATTCTCTCTTCACATTCTTCTTGGGTTCTTAAAATTGGGACCTCCTCTTGGGGACTAGCTGGGACTTTGGTGATGTTGATTCTCCTACTTTATTGGCAAAAC
TCTGTGCAAGAATTCCTCTGGAGA
mRNA sequenceShow/hide mRNA sequence
TTCTGCTCAACAAAACCCAAAACCATGGACATGGATACGTCTCAGAGACCACTGGCCATGGCTTTGGCTCTTGCTTCTGCACTGCTGCTTTCTCCATTGAGATCCTTCGA
AAGCAGCTCTGGATTTGTTCTTCCAATGCTTCTTATGGGGCTTGTAATTGCCATTAAGACGTCTTCATCTTCCTCTTCCTCATCCATGTCCACGCACAGAGGGGAGGGAG
CTTCTGCAATTCTCTCTTCACATTCTTCTTGGGTTCTTAAAATTGGGACCTCCTCTTGGGGACTAGCTGGGACTTTGGTGATGTTGATTCTCCTACTTTATTGGCAAAAC
TCTGTGCAAGAATTCCTCTGGAGA
Protein sequenceShow/hide protein sequence
FCSTKPKTMDMDTSQRPLAMALALASALLLSPLRSFESSSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRGEGASAILSSHSSWVLKIGTSSWGLAGTLVMLILLLYWQN
SVQEFLWR