CuGenDBv2

Gene ID	MS016195
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Genome location	scaffold9_2:1007337..1007613
RNA-Seq Expression	MS016195
Synteny	MS016195
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

YP_009028096.1 Ycf2 [Licania heteromorpha]

1.3e-28

74.26

Show/hide

Query:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ
        IA NKL+T IKI RLLIPQQ+KHFFTLSYTR  HLEKKM+HTNGFGSI    NVRDL+ LTN+ LSISIT        NIIR ALHRQTWDLRSR+RSVQ
Subjt:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ

Query:  D
        D
Subjt:  D

YP_009707932.1 hypothetical protein RF2 [Begonia pulchrifolia]

7.5e-29

74.26

Show/hide

Query:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ
        IA NKL+TYIKI RLLIPQQ+KHFFTLSYTR  HLEKKM HTNGFGSI    NVRDL+ LTN+ LSISIT        NIIR ALHRQTWDLRS++RSVQ
Subjt:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ

Query:  D
        D
Subjt:  D

YP_009733686.1 hypothetical chloroplast RF21 [Begonia guangxiensis]

7.5e-29

74.26

Show/hide

Query:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ
        IA NKL+TYIKI RLLIPQQ+KHFFTLSYTR  HLEKKM HTNGFGSI    NVRDL+ LTN+ LSISIT        NIIR ALHRQTWDLRS++RSVQ
Subjt:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ

Query:  D
        D
Subjt:  D

YP_009775177.1 hypothetical chloroplast RF21 [Begonia versicolor]

7.5e-29

74.26

Show/hide

Query:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ
        IA NKL+TYIKI RLLIPQQ+KHFFTLSYTR  HLEKKM HTNGFGSI    NVRDL+ LTN+ LSISIT        NIIR ALHRQTWDLRS++RSVQ
Subjt:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ

Query:  D
        D
Subjt:  D

YP_010117493.1 Ycf2 [Begonia coptidifolia]

7.5e-29

74.26

Show/hide

Query:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ
        IA NKL+TYIKI RLLIPQQ+KHFFTLSYTR  HLEKKM HTNGFGSI    NVRDL+ LTN+ LSISIT        NIIR ALHRQTWDLRS++RSVQ
Subjt:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ

Query:  D
        D
Subjt:  D

TrEMBL top hits

e value

%identity

Alignment

A0A023SZW8 Protein Ycf2

6.2e-29

74.26

Show/hide

Query:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ
        IA NKL+T IKI RLLIPQQ+KHFFTLSYTR  HLEKKM+HTNGFGSI    NVRDL+ LTN+ LSISIT        NIIR ALHRQTWDLRSR+RSVQ
Subjt:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ

Query:  D
        D
Subjt:  D

A0A5J6E3M5 Protein Ycf2

3.6e-29

74.26

Show/hide

Query:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ
        IA NKL+TYIKI RLLIPQQ+KHFFTLSYTR  HLEKKM HTNGFGSI    NVRDL+ LTN+ LSISIT        NIIR ALHRQTWDLRS++RSVQ
Subjt:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ

Query:  D
        D
Subjt:  D

A0A6C0MDV7 Protein Ycf2

3.6e-29

74.26

Show/hide

Query:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ
        IA NKL+TYIKI RLLIPQQ+KHFFTLSYTR  HLEKKM HTNGFGSI    NVRDL+ LTN+ LSISIT        NIIR ALHRQTWDLRS++RSVQ
Subjt:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ

Query:  D
        D
Subjt:  D

A0A6H1XHY3 Protein Ycf2

3.6e-29

74.26

Show/hide

Query:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ
        IA NKL+TYIKI RLLIPQQ+KHFFTLSYTR  HLEKKM HTNGFGSI    NVRDL+ LTN+ LSISIT        NIIR ALHRQTWDLRS++RSVQ
Subjt:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ

Query:  D
        D
Subjt:  D

A0A7T1C674 Ycf2

3.6e-29

74.26

Show/hide

Query:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ
        IA NKL+TYIKI RLLIPQQ+KHFFTLSYTR  HLEKKM HTNGFGSI    NVRDL+ LTN+ LSISIT        NIIR ALHRQTWDLRS++RSVQ
Subjt:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ

Query:  D
        D
Subjt:  D

SwissProt top hits

e value

%identity

Alignment

Q09WV7 Protein Ycf2

3.2e-30

72.28

Show/hide

Query:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ
        IA NKL+T IKI RLLIPQQ+KHFFTLSYTR  HLEKKM HTNGFGSI    NVRDL+ LTN+ LSISIT        NIIR A HRQTWDLRS++RSVQ
Subjt:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ

Query:  D
        D
Subjt:  D

Q2QD30 Protein Ycf2

1.1e-30

73.27

Show/hide

Query:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ
        IA NKL+T IKI RLLIPQQ+KHFFTLSYTR  HLEKKM HTNGFGSI    NVRDL+ LTN+ LSISIT        NIIR ALHRQTWDLRS++RSVQ
Subjt:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ

Query:  D
        D
Subjt:  D

Q49KT6 Protein Ycf2

4.1e-30

72.28

Show/hide

Query:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ
        IA NKL+T IKI RLLIPQQ+KHFFTLSYTR  HLEKKM HTNGFGSI    NVRDL+ LTN+ LSISIT        N IR ALHRQTWDLRS++RSVQ
Subjt:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ

Query:  D
        D
Subjt:  D

Q8S8U1 Protein Ycf2 B

4.1e-30

72.28

Show/hide

Query:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ
        IA NKL+T IKI RLLIPQQ+KHFFTLSYTR  HLEKKM HTNGFGSI    N RDL+ LTN+VLSISIT        N IR ALHRQTWDLRS++RSVQ
Subjt:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ

Query:  D
        D
Subjt:  D

Q8S8V2 Protein Ycf2 A

4.1e-30

72.28

Show/hide

Query:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ
        IA NKL+T IKI RLLIPQQ+KHFFTLSYTR  HLEKKM HTNGFGSI    N RDL+ LTN+VLSISIT        N IR ALHRQTWDLRS++RSVQ
Subjt:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ

Query:  D
        D
Subjt:  D

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

2.7e-29

69.31

Show/hide

Query:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ
        IA NKL+T IKI RLLIPQQ+KHFFTLSYTR  HLEKKM HTNGF SI    + RDL+ LTN+ LSISIT        N IR ALHRQTWDLRS++RSVQ
Subjt:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ

Query:  D
        D
Subjt:  D

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

2.7e-29

69.31

Show/hide

Query:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ
        IA NKL+T IKI RLLIPQQ+KHFFTLSYTR  HLEKKM HTNGF SI    + RDL+ LTN+ LSISIT        N IR ALHRQTWDLRS++RSVQ
Subjt:  IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSI---GNVRDLIVLTNKVLSISITH-------NIIRYALHRQTWDLRSRIRSVQ

Query:  D
        D
Subjt:  D

Sequences

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CDS sequence

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ATAGCTTCGAATAAATTAAGTACATACATTAAAATACTAAGACTTCTTATTCCACAACAACAAAAACACTTTTTCACTCTTTCATATACTAGAATATCTCACTTAGAAAA
GAAAATGATCCATACTAATGGATTCGGTTCCATTGGGAATGTACGAGATCTTATAGTACTTACTAATAAGGTCTTATCGATTAGTATTACGCATAATATAATTAGATATG
CTCTTCATAGACAAACTTGGGATTTGCGATCCCGGATAAGATCGGTTCAGGAT

mRNA sequence

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Protein sequence

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IASNKLSTYIKILRLLIPQQQKHFFTLSYTRISHLEKKMIHTNGFGSIGNVRDLIVLTNKVLSISITHNIIRYALHRQTWDLRSRIRSVQD

MS016195 (gene) of Bitter gourd (TR) v1 genome