CuGenDBv2

Gene ID	MS016198
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ubiquitin-like protein ATG12
Genome location	scaffold9_2:1025898..1026837
RNA-Seq Expression	MS016198
Synteny	MS016198
Gene Ontology terms	GO:0000045 - autophagosome assembly (biological process) GO:0000422 - autophagy of mitochondrion (biological process) GO:0006412 - translation (biological process) GO:0006501 - C-terminal protein lipidation (biological process) GO:0044804 - autophagy of nucleus (biological process) GO:0005840 - ribosome (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0034045 - phagophore assembly site membrane (cellular component) GO:0034274 - Atg12-Atg5-Atg16 complex (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR007242 - Ubiquitin-like protein Atg12 IPR029071 - Ubiquitin-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004151012.1 ubiquitin-like protein ATG12 [Cucumis sativus]

1.3e-27

93.85

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Query:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG
        ++MPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Subjt:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG

XP_008464001.1 PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo]

1.3e-27

93.85

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Query:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG
        ++MPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Subjt:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG

XP_022153405.1 ubiquitin-like protein ATG12 [Momordica charantia]

3.1e-29

96.92

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Query:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG
        ++MPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG
Subjt:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG

XP_022980759.1 ubiquitin-like protein ATG12 [Cucurbita maxima]

1.3e-27

93.85

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Query:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG
        ++MPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Subjt:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG

XP_038878493.1 ubiquitin-like protein ATG12 [Benincasa hispida]

1.3e-27

93.85

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Query:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG
        ++MPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Subjt:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIA6 Ubiquitin-like protein ATG12

6.4e-28

93.85

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Query:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG
        ++MPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Subjt:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG

A0A1S3CKI1 Ubiquitin-like protein ATG12

6.4e-28

93.85

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Query:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG
        ++MPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Subjt:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG

A0A6J1DGR5 Ubiquitin-like protein ATG12

1.5e-29

96.92

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Query:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG
        ++MPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG
Subjt:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG

A0A6J1GTZ1 Ubiquitin-like protein ATG12

6.4e-28

93.85

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Query:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG
        ++MPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Subjt:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG

A0A6J1J054 Ubiquitin-like protein ATG12

6.4e-28

93.85

Show/hide

Query:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG
        ++MPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Subjt:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG

SwissProt top hits

e value

%identity

Alignment

A2YAG8 Ubiquitin-like protein ATG12

3.3e-21

64.62

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Query:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG
        +++ G +KF+K+ID++RR I +DT+F++VNSAFSP PDE + DLY+NFGIDG+LVVNYA SMAWG
Subjt:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG

Q1SF86 Ubiquitin-like protein ATG12

2.0e-23

72.31

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Query:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG
        +++ GTDKF KVID++RR + R++LFV+VNSAFSP PDE V DLY+NFG DGKLVVNYACSMAWG
Subjt:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG

Q69NP0 Ubiquitin-like protein ATG12

3.3e-21

64.62

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Query:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG
        +++ G +KF+K+ID++RR I +DT+F++VNSAFSP PDE + DLY+NFGIDG+LVVNYA SMAWG
Subjt:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG

Q8S924 Ubiquitin-like protein ATG12A

2.4e-24

73.85

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Query:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG
        +++PGTDKF KVID++RR +  D+LFV+VNSAFSP PDE+V DLY+NFG DGKLVVNYACSMAWG
Subjt:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG

Q9LVK3 Ubiquitin-like protein ATG12B

2.3e-22

69.23

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Query:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG
        +++ G+DKF  VID++RR +  D+LFV+VNSAFSP PDE+V DLY+NFG DGKLVVNYACSMAWG
Subjt:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG

Arabidopsis top hits

e value

%identity

Alignment

AT1G54210.1 Ubiquitin-like superfamily protein

1.7e-25

73.85

Show/hide

Query:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG
        +++PGTDKF KVID++RR +  D+LFV+VNSAFSP PDE+V DLY+NFG DGKLVVNYACSMAWG
Subjt:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG

AT1G54210.2 Ubiquitin-like superfamily protein

1.5e-05

85.71

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Query:  YDNFGIDGKLVVNYACSMAWG
        + NFG DGKLVVNYACSMAWG
Subjt:  YDNFGIDGKLVVNYACSMAWG

AT3G13970.1 Ubiquitin-like superfamily protein

1.6e-23

69.23

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Query:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG
        +++ G+DKF  VID++RR +  D+LFV+VNSAFSP PDE+V DLY+NFG DGKLVVNYACSMAWG
Subjt:  WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG

Sequences

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CDS sequence

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TGGCAGATGCCTGGAACAGACAAATTTATTAAAGTTATTGATTACATACGCCGGTCAATTCAACGAGACACCTTGTTTGTGTTTGTCAATAGTGCATTCTCACCAGGTCC
AGATGAGACAGTTAATGATCTTTACGACAACTTTGGAATTGATGGGAAGTTGGTGGTAAATTATGCCTGCTCAATGGCTTGGGGC

mRNA sequence

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TGGCAGATGCCTGGAACAGACAAATTTATTAAAGTTATTGATTACATACGCCGGTCAATTCAACGAGACACCTTGTTTGTGTTTGTCAATAGTGCATTCTCACCAGGTCC
AGATGAGACAGTTAATGATCTTTACGACAACTTTGGAATTGATGGGAAGTTGGTGGTAAATTATGCCTGCTCAATGGCTTGGGGC

Protein sequence

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WQMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG

MS016198 (gene) of Bitter gourd (TR) v1 genome