; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS016201 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016201
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold9_2:1040398..1041020
RNA-Seq ExpressionMS016201
SyntenyMS016201
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
GO:0016746 - transferase activity, transferring acyl groups (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606697.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]5.4e-9986.12Show/hide
Query:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL
        VSNAL+HMHSKFG+I++A+EEF RMKD DVVTYSTLITALADHG A EA+DLFS+MQEEGIKPN++CFTGVLNACGHAGMIEQGCK F+LMNKVFGIEPL
Subjt:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL

Query:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREI-CKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMV-ERGIRK
        KEHY CMVDLLGRAGEVE AYSLIK +VR I  KIWGSLLGACKIHGNVELGEIAARHLF  EPENTGNYVLLANTY+QRKEWDEAERVRNM+ ERGI+K
Subjt:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREI-CKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMV-ERGIRK

Query:  SPGYSWISS
        SPGYSWI S
Subjt:  SPGYSWISS

XP_022153459.1 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g37570 [Momordica charantia]4.2e-11296.15Show/hide
Query:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL
        VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPN++CFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL
Subjt:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL

Query:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREI-CKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMVERGIRKS
        KEHYACMVDLLGRAGEVEMAYSLIKDRVREI  + WG LLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTY+QRKEWDEAERVRNMVERGIRKS
Subjt:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREI-CKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMVERGIRKS

Query:  PGYSWISS
        PGYSWISS
Subjt:  PGYSWISS

XP_022949207.1 putative pentatricopeptide repeat-containing protein At5g37570 [Cucurbita moschata]1.1e-9986.6Show/hide
Query:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL
        VSNAL+HMHSKFG+I++A+EEF RMKD DVVTYSTLITALADHG A EA+DLFS+MQEEGIKPN++CFTGVLNACGHAGMIEQGCK F+LMNKVFGIEPL
Subjt:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL

Query:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREI-CKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMV-ERGIRK
        KEHY CMVDLLGRAGEVE AYSLIK +VR I  KIWGSLLGACKIHGNVELGEIAARHLF MEPENTGNYVLLANTY+QRKEWDEAERVRNM+ ERGI+K
Subjt:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREI-CKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMV-ERGIRK

Query:  SPGYSWISS
        SPGYSWI S
Subjt:  SPGYSWISS

XP_023525129.1 putative pentatricopeptide repeat-containing protein At5g37570 [Cucurbita pepo subsp. pepo]2.8e-10087.08Show/hide
Query:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL
        VSNALIHMHSKFG+I++A+EEF RMKD DVVTYSTLITALADHGKA EA+DLFS+MQEEGIKPN++CFTGVLNACGHAGMIEQGCK F+LMNKVFGIEP+
Subjt:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL

Query:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREI-CKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMV-ERGIRK
        KEHY CMVDLLGRAGEVE AYSLIK +VR I  KIWGSLLGACKIHGNVELGEIAARHLF MEPENTGNYVLLANTY+QRKEWDEAERVRNM+ ERGI+K
Subjt:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREI-CKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMV-ERGIRK

Query:  SPGYSWISS
        SPGYSWI S
Subjt:  SPGYSWISS

XP_038893679.1 putative pentatricopeptide repeat-containing protein At5g37570 [Benincasa hispida]2.8e-10087.02Show/hide
Query:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL
        VSNALIHMHSKFGNIE+A+EEF RMKD DVVTYSTLITALADHGKA+EA+DLFS+M+EEGIKPN++CFTGVLNACGHAGMIEQGCKYF+LM+K FGIEPL
Subjt:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL

Query:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREI-CKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRN-MVERGIRK
        KEHYACMVDLLGRAGEVEMAYSLIK +VREI  K WGSLLGACKIHGN+ELGEIAARHLF MEPENTGNYVLLANTY+Q KEW+EAE+VRN MVE+GIRK
Subjt:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREI-CKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRN-MVERGIRK

Query:  SPGYSWIS
         PGYSWIS
Subjt:  SPGYSWIS

TrEMBL top hitse value%identityAlignment
A0A0A0LDB3 Uncharacterized protein6.2e-9380.68Show/hide
Query:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL
        VSNALIH HSKFGNIERAQEEF RMKD DVVTYSTLI ALADHGKA EA+DLFS+M+EEGIKPN++CF GVLNAC HAG+IEQGCKYF+LM K FGIEP 
Subjt:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL

Query:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREICKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRN-MVERGIRKS
        K HYACMVDLLGRAGEVEMAY++IK       K WGSLLGACKIHGN+E+GEIAA+HLF MEPENTGNYVLLANTY+Q KEW+EAE+VRN MVERGI+K 
Subjt:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREICKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRN-MVERGIRKS

Query:  PGYSWIS
        PGYSW+S
Subjt:  PGYSWIS

A0A5A7UTL0 Putative pentatricopeptide repeat-containing protein2.6e-9179.23Show/hide
Query:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL
        VSNALIH HSKFGNIE+AQEEF RMKD DVVTYSTLI ALADHGKA EA+DLFS+M+EEGIKPN++CF G LNAC HAG+IEQGCKYF+LM K FGIEP 
Subjt:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL

Query:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREICKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRN-MVERGIRKS
        K HYACMVDLLGRAGEVEMAY++IK       K WGSLLGACKIHGN+E+GEIAA+HLF MEPENTGNYVLLANTY+Q KEW+EAE+VR  MVERGIRK 
Subjt:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREICKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRN-MVERGIRKS

Query:  PGYSWIS
        PGY W+S
Subjt:  PGYSWIS

A0A6J1DJ44 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g375702.0e-11296.15Show/hide
Query:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL
        VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPN++CFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL
Subjt:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL

Query:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREI-CKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMVERGIRKS
        KEHYACMVDLLGRAGEVEMAYSLIKDRVREI  + WG LLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTY+QRKEWDEAERVRNMVERGIRKS
Subjt:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREI-CKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMVERGIRKS

Query:  PGYSWISS
        PGYSWISS
Subjt:  PGYSWISS

A0A6J1GBE0 putative pentatricopeptide repeat-containing protein At5g375705.2e-10086.6Show/hide
Query:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL
        VSNAL+HMHSKFG+I++A+EEF RMKD DVVTYSTLITALADHG A EA+DLFS+MQEEGIKPN++CFTGVLNACGHAGMIEQGCK F+LMNKVFGIEPL
Subjt:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL

Query:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREI-CKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMV-ERGIRK
        KEHY CMVDLLGRAGEVE AYSLIK +VR I  KIWGSLLGACKIHGNVELGEIAARHLF MEPENTGNYVLLANTY+QRKEWDEAERVRNM+ ERGI+K
Subjt:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREI-CKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMV-ERGIRK

Query:  SPGYSWISS
        SPGYSWI S
Subjt:  SPGYSWISS

A0A6J1KBT3 putative pentatricopeptide repeat-containing protein At5g375703.8e-9885.17Show/hide
Query:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL
        VSNALIH+HSKFG+I++A+EEF R KD D+VTYSTLITALADHGKA EA+DLFS+MQEEGIKPN++CFTGVLNACGHAGMIEQGCK F+LMNKVFGIEPL
Subjt:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL

Query:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREI-CKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMV-ERGIRK
        KEHY CMVDLLGRAGEVE AYSLIK   R I  KIWGSLLGACKIHGNVELGEIAARHLF MEPENTGNYVLLANTY+QRK+WDEAERVRNM+ ERGI+K
Subjt:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREI-CKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMV-ERGIRK

Query:  SPGYSWISS
        SPGYSWI S
Subjt:  SPGYSWISS

SwissProt top hitse value%identityAlignment
Q7Y211 Pentatricopeptide repeat-containing protein At3g57430, chloroplastic1.6e-5045.19Show/hide
Query:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL
        V +AL+ M++K G ++ +++ F ++   +V+T++ +I A   HG   EA+DL   M  +G+KPN++ F  V  AC H+GM+++G + F +M   +G+EP 
Subjt:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL

Query:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREICK--IWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERV-RNMVERGIR
         +HYAC+VDLLGRAG ++ AY L+    R+  K   W SLLGA +IH N+E+GEIAA++L  +EP    +YVLLAN YS    WD+A  V RNM E+G+R
Subjt:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREICK--IWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERV-RNMVERGIR

Query:  KSPGYSWI
        K PG SWI
Subjt:  KSPGYSWI

Q9FFG8 Pentatricopeptide repeat-containing protein At5g442307.9e-5347.12Show/hide
Query:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRM-QEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEP
        + +ALI M+SK GN+E A   F  M + +V TYS++I  LA HG+A EA+ LF  M  +  IKPN + F G L AC H+G+++QG + F  M + FG++P
Subjt:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRM-QEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEP

Query:  LKEHYACMVDLLGRAGEVEMAYSLIKD-RVREICKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMV-ERGIR
         ++HY CMVDLLGR G ++ A  LIK   V     +WG+LLGAC+IH N E+ EIAA HLF +EP+  GNY+LL+N Y+   +W    RVR ++ E+G++
Subjt:  LKEHYACMVDLLGRAGEVEMAYSLIKD-RVREICKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMV-ERGIR

Query:  KSPGYSWI
        K+P  SW+
Subjt:  KSPGYSWI

Q9SI53 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial1.3e-5245.41Show/hide
Query:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL
        ++NAL+ M+ K G++E A   F +MK+ DV+T+ST+I+ LA +G + EA+ LF RM+  G KPN +   GVL AC HAG++E G  YF+ M K++GI+P+
Subjt:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL

Query:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREICKI-WGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVR-NMVERGIRK
        +EHY CM+DLLG+AG+++ A  L+ +   E   + W +LLGAC++  N+ L E AA+ +  ++PE+ G Y LL+N Y+  ++WD  E +R  M +RGI+K
Subjt:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREICKI-WGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVR-NMVERGIRK

Query:  SPGYSWI
         PG SWI
Subjt:  SPGYSWI

Q9STF3 Pentatricopeptide repeat-containing protein At3g46790, chloroplastic1.1e-5146.38Show/hide
Query:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL
        V +AL+ M+ + G +E  Q  F RM D DVV++++LI++   HG   +A+ +F  M   G  P  + F  VL AC H G++E+G + F+ M +  GI+P 
Subjt:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL

Query:  KEHYACMVDLLGRAGEVEMAYSLIKD-RVREICKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMVE-RGIRK
         EHYACMVDLLGRA  ++ A  +++D R     K+WGSLLG+C+IHGNVEL E A+R LF +EP+N GNYVLLA+ Y++ + WDE +RV+ ++E RG++K
Subjt:  KEHYACMVDLLGRAGEVEMAYSLIKD-RVREICKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMVE-RGIRK

Query:  SPGYSWI
         PG  W+
Subjt:  SPGYSWI

Q9SY02 Pentatricopeptide repeat-containing protein At4g027504.8e-5045.41Show/hide
Query:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL
        V NAL+ M+ K G+IE A + F  M   D+V+++T+I   + HG    A+  F  M+ EG+KP+      VL+AC H G++++G +YF  M + +G+ P 
Subjt:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL

Query:  KEHYACMVDLLGRAGEVEMAYSLIKDRVRE-ICKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVR-NMVERGIRK
         +HYACMVDLLGRAG +E A++L+K+   E    IWG+LLGA ++HGN EL E AA  +F MEPEN+G YVLL+N Y+    W +  ++R  M ++G++K
Subjt:  KEHYACMVDLLGRAGEVEMAYSLIKDRVRE-ICKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVR-NMVERGIRK

Query:  SPGYSWI
         PGYSWI
Subjt:  SPGYSWI

Arabidopsis top hitse value%identityAlignment
AT2G03880.1 Pentatricopeptide repeat (PPR) superfamily protein9.6e-5445.41Show/hide
Query:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL
        ++NAL+ M+ K G++E A   F +MK+ DV+T+ST+I+ LA +G + EA+ LF RM+  G KPN +   GVL AC HAG++E G  YF+ M K++GI+P+
Subjt:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL

Query:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREICKI-WGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVR-NMVERGIRK
        +EHY CM+DLLG+AG+++ A  L+ +   E   + W +LLGAC++  N+ L E AA+ +  ++PE+ G Y LL+N Y+  ++WD  E +R  M +RGI+K
Subjt:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREICKI-WGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVR-NMVERGIRK

Query:  SPGYSWI
         PG SWI
Subjt:  SPGYSWI

AT3G46790.1 Tetratricopeptide repeat (TPR)-like superfamily protein8.1e-5346.38Show/hide
Query:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL
        V +AL+ M+ + G +E  Q  F RM D DVV++++LI++   HG   +A+ +F  M   G  P  + F  VL AC H G++E+G + F+ M +  GI+P 
Subjt:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL

Query:  KEHYACMVDLLGRAGEVEMAYSLIKD-RVREICKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMVE-RGIRK
         EHYACMVDLLGRA  ++ A  +++D R     K+WGSLLG+C+IHGNVEL E A+R LF +EP+N GNYVLLA+ Y++ + WDE +RV+ ++E RG++K
Subjt:  KEHYACMVDLLGRAGEVEMAYSLIKD-RVREICKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMVE-RGIRK

Query:  SPGYSWI
         PG  W+
Subjt:  SPGYSWI

AT3G57430.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.2e-5145.19Show/hide
Query:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL
        V +AL+ M++K G ++ +++ F ++   +V+T++ +I A   HG   EA+DL   M  +G+KPN++ F  V  AC H+GM+++G + F +M   +G+EP 
Subjt:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL

Query:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREICK--IWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERV-RNMVERGIR
         +HYAC+VDLLGRAG ++ AY L+    R+  K   W SLLGA +IH N+E+GEIAA++L  +EP    +YVLLAN YS    WD+A  V RNM E+G+R
Subjt:  KEHYACMVDLLGRAGEVEMAYSLIKDRVREICK--IWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERV-RNMVERGIR

Query:  KSPGYSWI
        K PG SWI
Subjt:  KSPGYSWI

AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.4e-5145.41Show/hide
Query:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL
        V NAL+ M+ K G+IE A + F  M   D+V+++T+I   + HG    A+  F  M+ EG+KP+      VL+AC H G++++G +YF  M + +G+ P 
Subjt:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPL

Query:  KEHYACMVDLLGRAGEVEMAYSLIKDRVRE-ICKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVR-NMVERGIRK
         +HYACMVDLLGRAG +E A++L+K+   E    IWG+LLGA ++HGN EL E AA  +F MEPEN+G YVLL+N Y+    W +  ++R  M ++G++K
Subjt:  KEHYACMVDLLGRAGEVEMAYSLIKDRVRE-ICKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVR-NMVERGIRK

Query:  SPGYSWI
         PGYSWI
Subjt:  SPGYSWI

AT5G44230.1 Pentatricopeptide repeat (PPR) superfamily protein5.6e-5447.12Show/hide
Query:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRM-QEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEP
        + +ALI M+SK GN+E A   F  M + +V TYS++I  LA HG+A EA+ LF  M  +  IKPN + F G L AC H+G+++QG + F  M + FG++P
Subjt:  VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRM-QEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEP

Query:  LKEHYACMVDLLGRAGEVEMAYSLIKD-RVREICKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMV-ERGIR
         ++HY CMVDLLGR G ++ A  LIK   V     +WG+LLGAC+IH N E+ EIAA HLF +EP+  GNY+LL+N Y+   +W    RVR ++ E+G++
Subjt:  LKEHYACMVDLLGRAGEVEMAYSLIKD-RVREICKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMV-ERGIR

Query:  KSPGYSWI
        K+P  SW+
Subjt:  KSPGYSWI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTCTCCAACGCACTGATCCACATGCATTCAAAATTTGGCAATATCGAACGGGCACAGGAAGAATTCTACAGAATGAAGGATACAGATGTGGTCACTTATAGTACGTTGAT
CACAGCCCTGGCTGACCATGGAAAAGCCATGGAAGCCATGGATCTCTTCTCCAGAATGCAAGAAGAAGGTATAAAGCCAAACAAGCTATGTTTCACTGGCGTACTAAATG
CATGTGGACATGCAGGGATGATTGAACAAGGATGCAAGTATTTTCAACTTATGAATAAGGTTTTCGGGATTGAGCCACTAAAGGAGCATTATGCCTGCATGGTTGATCTA
CTAGGAAGAGCAGGTGAGGTTGAAATGGCATACAGTCTTATCAAGGATAGGGTGAGGGAAATTTGCAAGATTTGGGGGTCATTGCTAGGAGCTTGCAAGATCCATGGTAA
CGTGGAGTTGGGTGAGATTGCTGCTAGGCATCTATTTGGGATGGAGCCAGAGAATACAGGAAATTATGTGCTTTTGGCAAATACATATTCTCAAAGGAAGGAATGGGATG
AAGCAGAGAGGGTTAGGAACATGGTTGAAAGAGGAATCAGAAAATCTCCGGGGTACAGTTGGATTTCAAGT
mRNA sequenceShow/hide mRNA sequence
GTCTCCAACGCACTGATCCACATGCATTCAAAATTTGGCAATATCGAACGGGCACAGGAAGAATTCTACAGAATGAAGGATACAGATGTGGTCACTTATAGTACGTTGAT
CACAGCCCTGGCTGACCATGGAAAAGCCATGGAAGCCATGGATCTCTTCTCCAGAATGCAAGAAGAAGGTATAAAGCCAAACAAGCTATGTTTCACTGGCGTACTAAATG
CATGTGGACATGCAGGGATGATTGAACAAGGATGCAAGTATTTTCAACTTATGAATAAGGTTTTCGGGATTGAGCCACTAAAGGAGCATTATGCCTGCATGGTTGATCTA
CTAGGAAGAGCAGGTGAGGTTGAAATGGCATACAGTCTTATCAAGGATAGGGTGAGGGAAATTTGCAAGATTTGGGGGTCATTGCTAGGAGCTTGCAAGATCCATGGTAA
CGTGGAGTTGGGTGAGATTGCTGCTAGGCATCTATTTGGGATGGAGCCAGAGAATACAGGAAATTATGTGCTTTTGGCAAATACATATTCTCAAAGGAAGGAATGGGATG
AAGCAGAGAGGGTTAGGAACATGGTTGAAAGAGGAATCAGAAAATCTCCGGGGTACAGTTGGATTTCAAGT
Protein sequenceShow/hide protein sequence
VSNALIHMHSKFGNIERAQEEFYRMKDTDVVTYSTLITALADHGKAMEAMDLFSRMQEEGIKPNKLCFTGVLNACGHAGMIEQGCKYFQLMNKVFGIEPLKEHYACMVDL
LGRAGEVEMAYSLIKDRVREICKIWGSLLGACKIHGNVELGEIAARHLFGMEPENTGNYVLLANTYSQRKEWDEAERVRNMVERGIRKSPGYSWISS