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MS016209 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016209
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGermin-like protein
Genome locationscaffold9_2:1079093..1079230
RNA-Seq ExpressionMS016209
SyntenyMS016209
Gene Ontology termsGO:0048046 - apoplast (cellular component)
GO:0030145 - manganese ion binding (molecular function)
InterPro domainsIPR006045 - Cupin 1
IPR011051 - RmlC-like cupin domain superfamily
IPR014710 - RmlC-like jelly roll fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008465454.1 PREDICTED: germin-like protein subfamily 3 member 4 [Cucumis melo]6.9e-1589.13Show/hide
Query:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
        LKAGDV+VFPK LLHFCLNSGYEPAI FSV+NSQNPGVVNINGA+F
Subjt:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF

XP_022153439.1 germin-like protein subfamily 3 member 4 [Momordica charantia]7.4e-1797.83Show/hide
Query:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
        LKAGDVMVFPK LLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
Subjt:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF

XP_022998490.1 germin-like protein subfamily 3 member 4 [Cucurbita maxima]7.7e-1484.78Show/hide
Query:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
        LK GDV+VFPK LLHFCLNSGYE A IFSV+NSQNPGVVN+NGAMF
Subjt:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF

XP_023522282.1 germin-like protein subfamily 3 member 4 [Cucurbita pepo subsp. pepo]7.7e-1484.78Show/hide
Query:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
        LK GDV+VFPK LLHFCLNSGYE A IFSV+NSQNPGVVN+NGAMF
Subjt:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF

XP_038905670.1 germin-like protein subfamily 3 member 4 [Benincasa hispida]2.4e-1591.3Show/hide
Query:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
        LKAGDV+VFPK LLHFCLNSGYEPAI FSV+NSQNPGVVNINGAMF
Subjt:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF

TrEMBL top hitse value%identityAlignment
A0A1S3CNX7 Germin-like protein3.4e-1589.13Show/hide
Query:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
        LKAGDV+VFPK LLHFCLNSGYEPAI FSV+NSQNPGVVNINGA+F
Subjt:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF

A0A5D3DCK1 Germin-like protein3.4e-1589.13Show/hide
Query:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
        LKAGDV+VFPK LLHFCLNSGYEPAI FSV+NSQNPGVVNINGA+F
Subjt:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF

A0A6J1DJ19 Germin-like protein3.6e-1797.83Show/hide
Query:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
        LKAGDVMVFPK LLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
Subjt:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF

A0A6J1GAI2 Germin-like protein3.7e-1484.78Show/hide
Query:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
        LK GDV+VFPK LLHFCLNSGYE A IFSV+NSQNPGVVN+NGAMF
Subjt:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF

A0A6J1KCN7 Germin-like protein3.7e-1484.78Show/hide
Query:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
        LK GDV+VFPK LLHFCLNSGYE A IFSV+NSQNPGVVN+NGAMF
Subjt:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF

SwissProt top hitse value%identityAlignment
Q2R352 Germin-like protein 11-12.2e-0858.7Show/hide
Query:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
        L  GDV +FP+ L+HF +N G+  A  FSV NSQNPGVV I  AMF
Subjt:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF

Q6ESF0 Germin-like protein 2-48.5e-0850Show/hide
Query:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
        L+ G+VMVFP+ ++HF LN G  PA ++  FNS+NPG+V I   +F
Subjt:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF

Q7XSN6 Germin-like protein 4-14.2e-0752.17Show/hide
Query:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
        L  GDV VFP+ L+HF LN+G  PA+  +  +SQNPGV+ I  A+F
Subjt:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF

Q9FLT3 Germin-like protein subfamily 3 member 41.7e-1173.17Show/hide
Query:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNI
        L+ GDV VFPK LLHFCL+ G+EPA  FS +NSQNPGVVNI
Subjt:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNI

Q9FMA6 Putative germin-like protein subfamily 1 member 124.2e-0750Show/hide
Query:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
        L  GDV VFP+ L+HF +N G +PA+ F+  +SQNPGV+ I   +F
Subjt:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF

Arabidopsis top hitse value%identityAlignment
AT1G02335.1 germin-like protein subfamily 2 member 2 precursor3.3e-0745.65Show/hide
Query:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
        +K G+V VFP+ L+HF  N+G  PA + S FNSQ PG  ++   +F
Subjt:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF

AT1G09560.1 germin-like protein 55.7e-0747.83Show/hide
Query:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
        LK GDV  FPK L+HF  N+G  PA + + FNSQ PG  ++   +F
Subjt:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF

AT5G38910.1 RmlC-like cupins superfamily protein2.5e-0750Show/hide
Query:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
        L  GDV VFP+ L+HF +N G  PA+ F+  +SQNPGV+ I   +F
Subjt:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF

AT5G38960.1 RmlC-like cupins superfamily protein3.0e-0850Show/hide
Query:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
        L  GDV VFP+ L+HF +N G +PA+ F+  +SQNPGV+ I   +F
Subjt:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF

AT5G61750.1 RmlC-like cupins superfamily protein1.2e-1273.17Show/hide
Query:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNI
        L+ GDV VFPK LLHFCL+ G+EPA  FS +NSQNPGVVNI
Subjt:  LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTAAAAGCGGGCGATGTGATGGTATTTCCAAAGGAGTTATTACACTTCTGTTTGAATTCTGGATATGAGCCTGCCATCATTTTCTCTGTGTTTAACAGTCAAAATCCAGG
AGTCGTCAACATTAATGGCGCCATGTTT
mRNA sequenceShow/hide mRNA sequence
CTAAAAGCGGGCGATGTGATGGTATTTCCAAAGGAGTTATTACACTTCTGTTTGAATTCTGGATATGAGCCTGCCATCATTTTCTCTGTGTTTAACAGTCAAAATCCAGG
AGTCGTCAACATTAATGGCGCCATGTTT
Protein sequenceShow/hide protein sequence
LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF