; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS016241 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016241
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionmRNA export factor
Genome locationscaffold9_2:1373636..1378767
RNA-Seq ExpressionMS016241
SyntenyMS016241
Gene Ontology termsGO:0000972 - transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery (biological process)
GO:0006405 - RNA export from nucleus (biological process)
GO:0005643 - nuclear pore (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0043130 - ubiquitin binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144434.1 protein RAE1-like isoform X1 [Momordica charantia]7.0e-15685.48Show/hide
Query:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
        +SF PKANHLVATSWDNQVRCWEIMQNAGN+AST +ASISH HPVLCSA KDDGTTVFSGGCD QVKMWPLLSGGQAMT+AMHEAPVKEVAWIPEMSLLV
Subjt:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV

Query:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD
        SGSWDKTLKYW TRQPNPVHT QLPDRCYSMTVRYPLMVVG  DRNLIVFNL SPQNEFKRIVSPLKYQTRCVAAFPDQQGFLV       GRVGVHHLD
Subjt:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD

Query:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYI
        +SLANKNFTF+CHR+GSEIYSVNSLNFHPV        SDGAF+FWDKD+K+RLK+ LRCSQPI+ STFNQDGSIFAY+VCYDW KGAEN+NPATAKTYI
Subjt:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYI

Query:  YLHLPQVHDV
        YLHLPQ  +V
Subjt:  YLHLPQVHDV

XP_022153448.1 protein RAE1-like [Momordica charantia]7.9e-17695.18Show/hide
Query:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
        VSF PKANHLVATSWDNQVRCWEIMQNAGNIASTL+ASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
Subjt:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV

Query:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD
        SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD
Subjt:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD

Query:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR--------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTY
        KSLANKNFTFRCHREGSEIYSVNSLNFHPV         SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDW KGAENYNPATAKTY
Subjt:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR--------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTY

Query:  IYLHLPQVHDV
        IYLHLPQ  +V
Subjt:  IYLHLPQVHDV

XP_022955507.1 protein RAE1-like [Cucurbita moschata]1.5e-15384.84Show/hide
Query:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
        +SF PKANHLVATSWDNQVRCWEIMQNAGN+AST +ASISH  PVLCSA KDDGTTVFSGGCD QVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
Subjt:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV

Query:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD
        SGSWDKTLKYW TRQPNPVHT QLPDRCYSMTVRYPLMVVG  DRNLIVFNL +PQNEFKRIVSPLKYQTRCVAAFPDQQGFLV       GRVGVHHLD
Subjt:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD

Query:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYI
        +SLANKNFTF+CHR+GSEIYSVNSLNFHPV        SDGAF+FWDKD+K+RLK+ LRCSQPI+ STFNQDGSIFAY+VCYDW KGAEN+NPATAKT I
Subjt:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYI

Query:  YLHLPQVHDV
        YLHLPQ  +V
Subjt:  YLHLPQVHDV

XP_022980460.1 protein RAE1-like [Cucurbita maxima]1.5e-15384.84Show/hide
Query:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
        +SF PKANHLVATSWDNQVRCWEIMQNAGN+AST +ASISH  PVLCSA KDDGTTVFSGGCD QVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
Subjt:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV

Query:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD
        SGSWDKTLKYW TRQPNPVHT QLPDRCYSMTVRYPLMVVG  DRNLIVFNL +PQNEFKRIVSPLKYQTRCVAAFPDQQGFLV       GRVGVHHLD
Subjt:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD

Query:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYI
        +SLANKNFTF+CHR+GSEIYSVNSLNFHPV        SDGAF+FWDKD+K+RLK+ LRCSQPI+ STFNQDGSIFAY+VCYDW KGAEN+NPATAKT I
Subjt:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYI

Query:  YLHLPQVHDV
        YLHLPQ  +V
Subjt:  YLHLPQVHDV

XP_023528848.1 protein RAE1-like [Cucurbita pepo subsp. pepo]7.2e-15384.52Show/hide
Query:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
        +SF PKANHLVATSWDNQVRCWEIMQNA N+AST +ASISH  PVLCSA KDDGTTVFSGGCD QVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
Subjt:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV

Query:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD
        SGSWDKTLKYW TRQPNPVHT QLPDRCYSMTVRYPLMVVG  DRNLIVFNL +PQNEFKRIVSPLKYQTRCVAAFPDQQGFLV       GRVGVHHLD
Subjt:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD

Query:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYI
        +SLANKNFTF+CHR+GSEIYSVNSLNFHPV        SDGAF+FWDKD+K+RLK+ LRCSQPI+ STFNQDGSIFAY+VCYDW KGAEN+NPATAKT I
Subjt:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYI

Query:  YLHLPQVHDV
        YLHLPQ  +V
Subjt:  YLHLPQVHDV

TrEMBL top hitse value%identityAlignment
A0A1S3CAI4 protein RAE15.6e-15182.58Show/hide
Query:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
        +SF PKANHLVATSWDNQVRCWEIMQNAGN+AST +ASISH  PVLCSA KDDGTTVFSGGCD QVKMWPLLSGGQAMTVAMH+APVKEVAWIPE++LLV
Subjt:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV

Query:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD
        SGSWDKTLKYW TRQPNPVHT QLPDRCYSM VR+PLMVVG  DRNLIVFNL +PQ+EFKRIVSPLKYQTRCVAAFPDQQGFLV       GRVGVHHLD
Subjt:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD

Query:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYI
        +S+ANKNFTF+CHR+GSEIYSVNSLNFHPV        SDGAF+FWDKD+K+RLK+  RCSQPI+ STFNQDGSIFAY+VCYDW KGAEN+NPATAKTYI
Subjt:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYI

Query:  YLHLPQVHDV
        YLHLPQ  +V
Subjt:  YLHLPQVHDV

A0A6J1CSA6 protein RAE1-like isoform X13.4e-15685.48Show/hide
Query:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
        +SF PKANHLVATSWDNQVRCWEIMQNAGN+AST +ASISH HPVLCSA KDDGTTVFSGGCD QVKMWPLLSGGQAMT+AMHEAPVKEVAWIPEMSLLV
Subjt:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV

Query:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD
        SGSWDKTLKYW TRQPNPVHT QLPDRCYSMTVRYPLMVVG  DRNLIVFNL SPQNEFKRIVSPLKYQTRCVAAFPDQQGFLV       GRVGVHHLD
Subjt:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD

Query:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYI
        +SLANKNFTF+CHR+GSEIYSVNSLNFHPV        SDGAF+FWDKD+K+RLK+ LRCSQPI+ STFNQDGSIFAY+VCYDW KGAEN+NPATAKTYI
Subjt:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYI

Query:  YLHLPQVHDV
        YLHLPQ  +V
Subjt:  YLHLPQVHDV

A0A6J1DHH4 protein RAE1-like3.8e-17695.18Show/hide
Query:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
        VSF PKANHLVATSWDNQVRCWEIMQNAGNIASTL+ASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
Subjt:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV

Query:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD
        SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD
Subjt:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD

Query:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR--------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTY
        KSLANKNFTFRCHREGSEIYSVNSLNFHPV         SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDW KGAENYNPATAKTY
Subjt:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR--------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTY

Query:  IYLHLPQVHDV
        IYLHLPQ  +V
Subjt:  IYLHLPQVHDV

A0A6J1GU54 protein RAE1-like7.1e-15484.84Show/hide
Query:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
        +SF PKANHLVATSWDNQVRCWEIMQNAGN+AST +ASISH  PVLCSA KDDGTTVFSGGCD QVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
Subjt:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV

Query:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD
        SGSWDKTLKYW TRQPNPVHT QLPDRCYSMTVRYPLMVVG  DRNLIVFNL +PQNEFKRIVSPLKYQTRCVAAFPDQQGFLV       GRVGVHHLD
Subjt:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD

Query:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYI
        +SLANKNFTF+CHR+GSEIYSVNSLNFHPV        SDGAF+FWDKD+K+RLK+ LRCSQPI+ STFNQDGSIFAY+VCYDW KGAEN+NPATAKT I
Subjt:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYI

Query:  YLHLPQVHDV
        YLHLPQ  +V
Subjt:  YLHLPQVHDV

A0A6J1ITM9 protein RAE1-like7.1e-15484.84Show/hide
Query:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
        +SF PKANHLVATSWDNQVRCWEIMQNAGN+AST +ASISH  PVLCSA KDDGTTVFSGGCD QVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
Subjt:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV

Query:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD
        SGSWDKTLKYW TRQPNPVHT QLPDRCYSMTVRYPLMVVG  DRNLIVFNL +PQNEFKRIVSPLKYQTRCVAAFPDQQGFLV       GRVGVHHLD
Subjt:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD

Query:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYI
        +SLANKNFTF+CHR+GSEIYSVNSLNFHPV        SDGAF+FWDKD+K+RLK+ LRCSQPI+ STFNQDGSIFAY+VCYDW KGAEN+NPATAKT I
Subjt:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYI

Query:  YLHLPQVHDV
        YLHLPQ  +V
Subjt:  YLHLPQVHDV

SwissProt top hitse value%identityAlignment
P78406 mRNA export factor3.1e-7446.84Show/hide
Query:  VSFCP---KANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWI--PE
        +SF P     N L+A SW N VRCWE+  +   I    +A   H  PVL     DDG+ VF+  CD   KMW  LS  QA+ +A H+APVK + WI  P 
Subjt:  VSFCP---KANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWI--PE

Query:  MSLLVSGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSL-GRV
         S +++GSWDKTLK+W TR  NP+  LQLP+RCY   V YP+ VV   +R LIV+ L +  +EF+RI SPLK+Q RCVA F D+Q     F   S+ GRV
Subjt:  MSLLVSGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSL-GRV

Query:  GVHHLD-KSLANKNFTFRCHREG-------SEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRK
         +H+++  + A  NFTF+CHR          +IY+VN + FHPV        SDG F FWDKD + +LK+S +  QPI+   FN +G+IFAYA  YDW K
Subjt:  GVHHLD-KSLANKNFTFRCHREG-------SEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRK

Query:  GAENYNPATAKTYIYL
        G E YNP   K YI+L
Subjt:  GAENYNPATAKTYIYL

Q38942 Protein RAE11.1e-13270.65Show/hide
Query:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
        +SF P+A+ LVATSWDNQVRCWEI ++  ++AS  +ASISH  PVLCSA KDDGTTVFSGGCD Q KMWPLLSGGQ +TVAMHE P+  +AWIP M+LL 
Subjt:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV

Query:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD
        +GSWDKTLKYW TRQ NPVHT QLPD+CY+++V++PLMVVG  DRNLIVFNL +PQ EFKRI SPLKYQTRCV AFPDQQGFLV       GRVGVHHLD
Subjt:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD

Query:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYI
         S  +KNFTF+CHR+G++IYSVNSLNFHPV        SDGAF+FWDKD+K+RLK+  RC+QPI  S+FN DGSI+AYA CYDW KGAEN+NPATAK+ I
Subjt:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYI

Query:  YLHLPQVHDV
        +LHLPQ  +V
Subjt:  YLHLPQVHDV

Q5FVA9 mRNA export factor8.2e-7546.2Show/hide
Query:  VSFCP---KANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWI--PE
        +SF P     N L+A SW N VRCWE+  N   I    +A   H  PVL     DDG+ VF+  CD   KMW  L+  Q++ +A H+AP+K V W+  P 
Subjt:  VSFCP---KANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWI--PE

Query:  MSLLVSGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSL-GRV
         S +++GSWDK+LK+W TR PNP+ TLQLP+RCY   V YP+ VV   +R LIV+ L +  +EF+RI SPLK+Q RCVA F D+Q     F   S+ GRV
Subjt:  MSLLVSGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSL-GRV

Query:  GVHHLD-KSLANKNFTFRCHREG-------SEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRK
         +H+++  + A  NFTF+CHR          +IY+VN + FHPV        SDG F FWDKD + +LK+S +  QPI+  +FN +G+IFAY+  YDW K
Subjt:  GVHHLD-KSLANKNFTFRCHREG-------SEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRK

Query:  GAENYNPATAKTYIYL
        G E YNP   K YI+L
Subjt:  GAENYNPATAKTYIYL

Q5RF99 mRNA export factor3.1e-7446.84Show/hide
Query:  VSFCP---KANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWI--PE
        +SF P     N L+A SW N VRCWE+  +   I    +A   H  PVL     DDG+ VF+  CD   KMW  LS  QA+ +A H+APVK + WI  P 
Subjt:  VSFCP---KANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWI--PE

Query:  MSLLVSGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSL-GRV
         S +++GSWDKTLK+W TR  NP+  LQLP+RCY   V YP+ VV   +R LIV+ L +  +EF+RI SPLK+Q RCVA F D+Q     F   S+ GRV
Subjt:  MSLLVSGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSL-GRV

Query:  GVHHLD-KSLANKNFTFRCHREG-------SEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRK
         +H+++  + A  NFTF+CHR          +IY+VN + FHPV        SDG F FWDKD + +LK+S +  QPI+   FN +G+IFAYA  YDW K
Subjt:  GVHHLD-KSLANKNFTFRCHREG-------SEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRK

Query:  GAENYNPATAKTYIYL
        G E YNP   K YI+L
Subjt:  GAENYNPATAKTYIYL

Q7ZWF0 mRNA export factor8.2e-7546.41Show/hide
Query:  NHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWI--PEMSLLVSGSWD
        N L+  SW N VRCWE+  N   +    +A   H  PVL     DDG+ VF+  CD   KMW  L+  QA+ +A HE P++ + WI  P  S +++GSWD
Subjt:  NHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWI--PEMSLLVSGSWD

Query:  KTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSL-GRVGVHHLD-KSL
        KTLK+W TR PNP+ +LQ+P+RCY   V YP+ VV   +R LIV+ L +  +EF+RI SPLK+Q RCVA F D+Q     F   S+ GRV +H+++  + 
Subjt:  KTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSL-GRVGVHHLD-KSL

Query:  ANKNFTFRCHREG-------SEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATA
        A  NFTF+CHR          +IY+VN+++FHPV        SDG F FWDKD + +LK+S +  QPIT   FN +G+IFAYA  YDW KG E YNP   
Subjt:  ANKNFTFRCHREG-------SEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATA

Query:  KTYIYL
        K YI+L
Subjt:  KTYIYL

Arabidopsis top hitse value%identityAlignment
AT1G15850.1 Transducin/WD40 repeat-like superfamily protein2.5e-4270.64Show/hide
Query:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
        +SF PKA+ LVATSWD QVRCWEI ++ G+IAS  + S+SH  PVLCSA KDDGTTVF+GGCD Q KMWPLLSG Q  TVAMH+AP  ++AWIP M+LLV
Subjt:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV

Query:  SGSWDKTLK
        +GSWDKTLK
Subjt:  SGSWDKTLK

AT1G49910.1 Transducin/WD40 repeat-like superfamily protein5.5e-3429.47Show/hide
Query:  FCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLVSG
        F   ++HL+ +SWD  VR ++           +     HG  VL     DD ++ FS   D +V+     + G+   +  HE PV+ V +      +++G
Subjt:  FCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLVSG

Query:  SWDKTLKYWGTR-----QPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVH
        SWDKT+K W  R     +   + T   P+R  S+++    +VV    R++ +++L +     +R  S LKYQTRCV  +P+  G+ +   S   GRV + 
Subjt:  SWDKTLKYWGTR-----QPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVH

Query:  HLDKSLA--NKNFTFRCHREGSE----IYSVNSLNFHPVRS-------DGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENY
          D S A   K + F+CHR+  +    +Y VN++ FHP+         DG  + WD +NKKRL    +    I   +F++DG + A A  Y + +G + +
Subjt:  HLDKSLA--NKNFTFRCHREGSE----IYSVNSLNFHPVRS-------DGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENY

Query:  NP
         P
Subjt:  NP

AT1G61210.1 Transducin/WD40 repeat-like superfamily protein1.9e-1030.63Show/hide
Query:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
        V F P    L + S D  ++ W+I +        ++    H   +       DG  V SGG DN VK+W L +G        HE P++ + + P   LL 
Subjt:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV

Query:  SGSWDKTLKYW
        +GS D+T+K+W
Subjt:  SGSWDKTLKYW

AT1G80670.1 Transducin/WD40 repeat-like superfamily protein8.0e-13470.65Show/hide
Query:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV
        +SF P+A+ LVATSWDNQVRCWEI ++  ++AS  +ASISH  PVLCSA KDDGTTVFSGGCD Q KMWPLLSGGQ +TVAMHE P+  +AWIP M+LL 
Subjt:  VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLV

Query:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD
        +GSWDKTLKYW TRQ NPVHT QLPD+CY+++V++PLMVVG  DRNLIVFNL +PQ EFKRI SPLKYQTRCV AFPDQQGFLV       GRVGVHHLD
Subjt:  SGSWDKTLKYWGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLD

Query:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYI
         S  +KNFTF+CHR+G++IYSVNSLNFHPV        SDGAF+FWDKD+K+RLK+  RC+QPI  S+FN DGSI+AYA CYDW KGAEN+NPATAK+ I
Subjt:  KSLANKNFTFRCHREGSEIYSVNSLNFHPVR-------SDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYI

Query:  YLHLPQVHDV
        +LHLPQ  +V
Subjt:  YLHLPQVHDV

AT3G19590.1 Transducin/WD40 repeat-like superfamily protein5.9e-3631.13Show/hide
Query:  FCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLVSG
        F   ++HL+ +SWD +VR +++  N      +L+    HG  VL     DD  + FS G D +V+   + + G+   +  H+  V+ V +      +++G
Subjt:  FCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLVSG

Query:  SWDKTLKYWGTR-----QPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVH
        SWDKT+K W  R     +   V T   P+R YSM++    +VV    R++ +++L +     +R  S LKYQTRCV  +P+  G+ +   S   GRV + 
Subjt:  SWDKTLKYWGTR-----QPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVH

Query:  HLDKSLA--NKNFTFRCHREGSE----IYSVNSLNFHPVRS-------DGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENY
          D S A   K + F+CHR+       +Y VNS+ FHP+         DG  + WD +NKKRL    +    I+  +F++DG + A A  Y + +G ++ 
Subjt:  HLDKSLA--NKNFTFRCHREGSE----IYSVNSLNFHPVRS-------DGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENY

Query:  NP
         P
Subjt:  NP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTCAGTTTTTGTCCGAAGGCCAATCACTTGGTTGCGACTTCATGGGATAATCAGGTTCGTTGTTGGGAAATAATGCAAAATGCGGGTAATATTGCCAGTACTCTTGAGGC
TTCAATATCTCATGGTCATCCGGTTTTATGCTCGGCACGGAAGGATGATGGAACAACGGTCTTTTCTGGAGGCTGTGACAATCAAGTTAAAATGTGGCCCTTACTGTCAG
GTGGTCAAGCCATGACTGTGGCCATGCATGAAGCACCCGTTAAAGAGGTTGCTTGGATCCCTGAGATGAGCCTGCTGGTCTCTGGAAGCTGGGACAAGACATTAAAGTAT
TGGGGTACAAGGCAGCCAAATCCAGTGCATACACTACAACTTCCTGATCGCTGTTATTCGATGACAGTAAGATATCCATTGATGGTAGTTGGTGCTACAGATAGAAACTT
GATAGTATTTAACTTGCATAGTCCACAGAATGAATTTAAGAGAATTGTTTCACCTTTGAAGTATCAGACAAGGTGTGTAGCTGCCTTTCCCGATCAGCAAGGTTTCTTGG
TAATATTTCCATCCCTTTCTCTAGGAAGGGTTGGTGTTCATCATCTTGACAAGTCTTTGGCGAATAAAAATTTCACTTTCAGGTGCCACAGGGAAGGATCAGAGATATAT
TCTGTCAACTCCTTGAACTTTCATCCAGTAAGGTCGGATGGTGCTTTTCATTTCTGGGACAAGGATAACAAAAAGAGGCTGAAGTCCAGTTTACGGTGCAGTCAGCCCAT
AACTTGGAGCACTTTCAACCAGGATGGTTCAATTTTTGCATATGCAGTGTGTTACGATTGGAGAAAGGGAGCAGAAAATTACAACCCTGCAACAGCAAAAACCTACATTT
ACTTACACCTGCCACAGGTACATGATGTC
mRNA sequenceShow/hide mRNA sequence
GTCAGTTTTTGTCCGAAGGCCAATCACTTGGTTGCGACTTCATGGGATAATCAGGTTCGTTGTTGGGAAATAATGCAAAATGCGGGTAATATTGCCAGTACTCTTGAGGC
TTCAATATCTCATGGTCATCCGGTTTTATGCTCGGCACGGAAGGATGATGGAACAACGGTCTTTTCTGGAGGCTGTGACAATCAAGTTAAAATGTGGCCCTTACTGTCAG
GTGGTCAAGCCATGACTGTGGCCATGCATGAAGCACCCGTTAAAGAGGTTGCTTGGATCCCTGAGATGAGCCTGCTGGTCTCTGGAAGCTGGGACAAGACATTAAAGTAT
TGGGGTACAAGGCAGCCAAATCCAGTGCATACACTACAACTTCCTGATCGCTGTTATTCGATGACAGTAAGATATCCATTGATGGTAGTTGGTGCTACAGATAGAAACTT
GATAGTATTTAACTTGCATAGTCCACAGAATGAATTTAAGAGAATTGTTTCACCTTTGAAGTATCAGACAAGGTGTGTAGCTGCCTTTCCCGATCAGCAAGGTTTCTTGG
TAATATTTCCATCCCTTTCTCTAGGAAGGGTTGGTGTTCATCATCTTGACAAGTCTTTGGCGAATAAAAATTTCACTTTCAGGTGCCACAGGGAAGGATCAGAGATATAT
TCTGTCAACTCCTTGAACTTTCATCCAGTAAGGTCGGATGGTGCTTTTCATTTCTGGGACAAGGATAACAAAAAGAGGCTGAAGTCCAGTTTACGGTGCAGTCAGCCCAT
AACTTGGAGCACTTTCAACCAGGATGGTTCAATTTTTGCATATGCAGTGTGTTACGATTGGAGAAAGGGAGCAGAAAATTACAACCCTGCAACAGCAAAAACCTACATTT
ACTTACACCTGCCACAGGTACATGATGTC
Protein sequenceShow/hide protein sequence
VSFCPKANHLVATSWDNQVRCWEIMQNAGNIASTLEASISHGHPVLCSARKDDGTTVFSGGCDNQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLVSGSWDKTLKY
WGTRQPNPVHTLQLPDRCYSMTVRYPLMVVGATDRNLIVFNLHSPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVIFPSLSLGRVGVHHLDKSLANKNFTFRCHREGSEIY
SVNSLNFHPVRSDGAFHFWDKDNKKRLKSSLRCSQPITWSTFNQDGSIFAYAVCYDWRKGAENYNPATAKTYIYLHLPQVHDV