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MS016244 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016244
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibonuclease 3-like protein 1
Genome locationscaffold9_2:1398725..1401032
RNA-Seq ExpressionMS016244
SyntenyMS016244
Gene Ontology termsGO:0030422 - production of siRNA involved in RNA interference (biological process)
GO:0090501 - RNA phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0004525 - ribonuclease III activity (molecular function)
InterPro domainsIPR014720 - Double-stranded RNA-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022153429.1 uncharacterized protein LOC111020939 isoform X1 [Momordica charantia]2.1e-10598.44Show/hide
Query:  MEQTPPYPRRLNVNLKNLPPINPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPEMKPDTAGALNTKTIPEASSDSFVAKNENSREIASTCSCGHRS
        MEQTPPYPRRLNVNLKNLPPINPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPEMKPDTAGALNTKTIPEASSDSFVAKNENSREIASTCSCGHRS
Subjt:  MEQTPPYPRRLNVNLKNLPPINPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPEMKPDTAGALNTKTIPEASSDSFVAKNENSREIASTCSCGHRS

Query:  AKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLGFS
        AKE  GTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLG+S
Subjt:  AKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLGFS

XP_022153430.1 uncharacterized protein LOC111020939 isoform X2 [Momordica charantia]1.7e-7598.6Show/hide
Query:  MEQTPPYPRRLNVNLKNLPPINPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPEMKPDTAGALNTKTIPEASSDSFVAKNENSREIASTCSCGHRS
        MEQTPPYPRRLNVNLKNLPPINPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPEMKPDTAGALNTKTIPEASSDSFVAKNENSREIASTCSCGHRS
Subjt:  MEQTPPYPRRLNVNLKNLPPINPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPEMKPDTAGALNTKTIPEASSDSFVAKNENSREIASTCSCGHRS

Query:  AKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAK
        AKE  GTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAK
Subjt:  AKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAK

XP_038878769.1 ribonuclease 3-like protein 1 isoform X1 [Benincasa hispida]1.9e-6669.65Show/hide
Query:  MEQTPPYPRRLNVNLKNLPPINPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPE------MKPDTAG---ALNTKTIPEASSDSFVAKNENSREIA
        ME T   PRRLN NLKNLPPIN       +H SI AKFEKSRYIRRVP F P NHRP       MKP  +G   ALN+KTIPEA SDSFV K +NS+EIA
Subjt:  MEQTPPYPRRLNVNLKNLPPINPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPE------MKPDTAG---ALNTKTIPEASSDSFVAKNENSREIA

Query:  STCS-CGHRSAKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLG
        S  S CGH S KE  GT EKRAAKSLLFE+CTAN+W+PPLFECCEEEGPSHAKK+RFKV VEMKGA + VLECYGN Q RKKVAA++AAEGA+W LK+LG
Subjt:  STCS-CGHRSAKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLG

Query:  F
        +
Subjt:  F

XP_038878786.1 ribonuclease 3-like protein 1 isoform X2 [Benincasa hispida]6.9e-6470.1Show/hide
Query:  MEQTPPYPRRLNVNLKNLPPINPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPE------MKPDTAG---ALNTKTIPEASSDSFVAKNENSREIA
        ME T   PRRLN NLKNLPPIN       +H SI AKFEKSRYIRRVP F P NHRP       MKP  +G   ALN+KTIPEA SDSFV K +NS+EIA
Subjt:  MEQTPPYPRRLNVNLKNLPPINPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPE------MKPDTAG---ALNTKTIPEASSDSFVAKNENSREIA

Query:  STCS-CGHRSAKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALW
        S  S CGH S KE  GT EKRAAKSLLFE+CTAN+W+PPLFECCEEEGPSHAKK+RFKV VEMKGA + VLECYGN Q RKKVAA++AAEGA+W
Subjt:  STCS-CGHRSAKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALW

XP_038878793.1 ribonuclease 3-like protein 1 isoform X3 [Benincasa hispida]1.9e-6669.65Show/hide
Query:  MEQTPPYPRRLNVNLKNLPPINPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPE------MKPDTAG---ALNTKTIPEASSDSFVAKNENSREIA
        ME T   PRRLN NLKNLPPIN       +H SI AKFEKSRYIRRVP F P NHRP       MKP  +G   ALN+KTIPEA SDSFV K +NS+EIA
Subjt:  MEQTPPYPRRLNVNLKNLPPINPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPE------MKPDTAG---ALNTKTIPEASSDSFVAKNENSREIA

Query:  STCS-CGHRSAKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLG
        S  S CGH S KE  GT EKRAAKSLLFE+CTAN+W+PPLFECCEEEGPSHAKK+RFKV VEMKGA + VLECYGN Q RKKVAA++AAEGA+W LK+LG
Subjt:  STCS-CGHRSAKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLG

Query:  F
        +
Subjt:  F

TrEMBL top hitse value%identityAlignment
A0A0A0KYI7 DRBM domain-containing protein1.3e-6365.38Show/hide
Query:  MEQTPPY-PRRLNVNLKNLPPI-NPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPEMK-------------PDTAGALNTKTIPEA-SSDSFVAKN
        ME  P   P RLN+NLKNLPPI NPR  +G+H  SIPAKFEKSRYIRRVP F P +HRPE++              D+A ALNTKT P A S+DSFV K 
Subjt:  MEQTPPY-PRRLNVNLKNLPPI-NPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPEMK-------------PDTAGALNTKTIPEA-SSDSFVAKN

Query:  ENSREIASTCS-CGHRSAKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGAL
        +  +++AS CS C H S KE  GT EKRAAKSLLFE+CTAN+W+PPLFECCEEEGPSHAKK+RFKV +EMKG C+AV+ECYGN Q RKKVAA++AAEGAL
Subjt:  ENSREIASTCS-CGHRSAKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGAL

Query:  WCLKHLGF
        W L HLG+
Subjt:  WCLKHLGF

A0A1S3BXK0 uncharacterized protein LOC103494682 isoform X11.1e-6263.77Show/hide
Query:  EQTPPYPRRLNVNLKNLPPI-NPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPEMK--------------PDTAGALNTKTIPEA-SSDSFVAKNE
        +  P  P RLN+NLKNLPPI NPR   G H  SIPAKFEKSRYIRRVP F P +HRPE++               D+A A+NTKTIP A S+D FV K +
Subjt:  EQTPPYPRRLNVNLKNLPPI-NPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPEMK--------------PDTAGALNTKTIPEA-SSDSFVAKNE

Query:  NSREIASTCS-CGHRSAKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALW
        N +++AS CS C H S KE  GT EKRAAKSLLFE+CTAN+W+PPLFECCEEEGPSHA+K+RFKV +EMKG C+AV+ECYGN Q RKK+AA++AAEGALW
Subjt:  NSREIASTCS-CGHRSAKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALW

Query:  CLKHLGF
         LK+LG+
Subjt:  CLKHLGF

A0A5D3E0Z9 Ribonuclease 3-like protein 11.1e-6263.77Show/hide
Query:  EQTPPYPRRLNVNLKNLPPI-NPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPEMK--------------PDTAGALNTKTIPEA-SSDSFVAKNE
        +  P  P RLN+NLKNLPPI NPR   G H  SIPAKFEKSRYIRRVP F P +HRPE++               D+A A+NTKTIP A S+D FV K +
Subjt:  EQTPPYPRRLNVNLKNLPPI-NPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPEMK--------------PDTAGALNTKTIPEA-SSDSFVAKNE

Query:  NSREIASTCS-CGHRSAKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALW
        N +++AS CS C H S KE  GT EKRAAKSLLFE+CTAN+W+PPLFECCEEEGPSHA+K+RFKV +EMKG C+AV+ECYGN Q RKK+AA++AAEGALW
Subjt:  NSREIASTCS-CGHRSAKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALW

Query:  CLKHLGF
         LK+LG+
Subjt:  CLKHLGF

A0A6J1DGU1 uncharacterized protein LOC111020939 isoform X28.4e-7698.6Show/hide
Query:  MEQTPPYPRRLNVNLKNLPPINPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPEMKPDTAGALNTKTIPEASSDSFVAKNENSREIASTCSCGHRS
        MEQTPPYPRRLNVNLKNLPPINPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPEMKPDTAGALNTKTIPEASSDSFVAKNENSREIASTCSCGHRS
Subjt:  MEQTPPYPRRLNVNLKNLPPINPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPEMKPDTAGALNTKTIPEASSDSFVAKNENSREIASTCSCGHRS

Query:  AKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAK
        AKE  GTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAK
Subjt:  AKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAK

A0A6J1DJ12 uncharacterized protein LOC111020939 isoform X11.0e-10598.44Show/hide
Query:  MEQTPPYPRRLNVNLKNLPPINPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPEMKPDTAGALNTKTIPEASSDSFVAKNENSREIASTCSCGHRS
        MEQTPPYPRRLNVNLKNLPPINPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPEMKPDTAGALNTKTIPEASSDSFVAKNENSREIASTCSCGHRS
Subjt:  MEQTPPYPRRLNVNLKNLPPINPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPEMKPDTAGALNTKTIPEASSDSFVAKNENSREIASTCSCGHRS

Query:  AKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLGFS
        AKE  GTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLG+S
Subjt:  AKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLGFS

SwissProt top hitse value%identityAlignment
A7LFZ6 Endoribonuclease Dicer homolog 42.0e-2656.18Show/hide
Query:  GTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLGFSPK
        G +  + A+S LFE+C ANYWKPP F+ C+EEGPSH +KF +KV+VE+KGA   +LEC+ + + +KK A ++AA+GALWCLK LG  PK
Subjt:  GTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLGFSPK

P84634 Dicer-like protein 42.9e-2559.3Show/hide
Query:  GTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLGF
        G    + AKSLL E C AN WKPP FECCEEEGP H K F +KVI+E++ A +  LECYG ++A KK AA++AA+ A+WCLKH GF
Subjt:  GTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLGF

Q9M8N2 Ribonuclease 3-like protein 17.0e-1942.55Show/hide
Query:  AKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGAC-DAVLECYGNSQARKKVAAQNAAEGALWCLKHLGFSP
        +K+      + +AKS+L E+C +  W+PP++ECC  +GP H + F +KV+VE++ +    VLEC+G+ + +KK AA++AAEGALW L+H+   P
Subjt:  AKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGAC-DAVLECYGNSQARKKVAAQNAAEGALWCLKHLGFSP

Arabidopsis top hitse value%identityAlignment
AT1G80650.1 RNAse THREE-like protein 15.0e-2042.55Show/hide
Query:  AKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGAC-DAVLECYGNSQARKKVAAQNAAEGALWCLKHLGFSP
        +K+      + +AKS+L E+C +  W+PP++ECC  +GP H + F +KV+VE++ +    VLEC+G+ + +KK AA++AAEGALW L+H+   P
Subjt:  AKEGIGTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGAC-DAVLECYGNSQARKKVAAQNAAEGALWCLKHLGFSP

AT4G00420.1 Double-stranded RNA-binding domain (DsRBD)-containing protein5.1e-1749.41Show/hide
Query:  EKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMK-GACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLGFS
        ++ +AKS L+ +C+  +WK PL+E    EGP H K F  KV VEMK  +   VLEC+GN Q +KK+AA+ AAE ALW LK++G++
Subjt:  EKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMK-GACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLGFS

AT4G00420.2 Double-stranded RNA-binding domain (DsRBD)-containing protein5.1e-1749.41Show/hide
Query:  EKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMK-GACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLGFS
        ++ +AKS L+ +C+  +WK PL+E    EGP H K F  KV VEMK  +   VLEC+GN Q +KK+AA+ AAE ALW LK++G++
Subjt:  EKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMK-GACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLGFS

AT5G20320.1 dicer-like 42.1e-2659.3Show/hide
Query:  GTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLGF
        G    + AKSLL E C AN WKPP FECCEEEGP H K F +KVI+E++ A +  LECYG ++A KK AA++AA+ A+WCLKH GF
Subjt:  GTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLGF

AT5G20320.2 dicer-like 42.1e-2659.3Show/hide
Query:  GTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLGF
        G    + AKSLL E C AN WKPP FECCEEEGP H K F +KVI+E++ A +  LECYG ++A KK AA++AA+ A+WCLKH GF
Subjt:  GTLEKRAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCAGACTCCTCCGTACCCTCGACGATTAAATGTCAATCTCAAAAATCTTCCTCCAATTAATCCCCGCACTGGAAATGGAAATCATCACTTCTCGATTCCGGCCAA
GTTTGAGAAATCCAGATATATTAGGCGCGTACCTCACTTTACGCCGCCGAATCACCGGCCGGAAATGAAGCCGGACACCGCTGGAGCTCTGAATACGAAGACGATTCCAG
AGGCTTCGTCGGATTCTTTCGTCGCGAAGAACGAGAACAGCCGGGAAATAGCTTCCACTTGCAGTTGCGGACATCGCTCAGCCAAAGAAGGTATCGGTACTTTAGAAAAG
AGAGCGGCAAAGTCCCTTCTGTTTGAGGTCTGCACTGCAAATTACTGGAAACCTCCTCTGTTTGAATGCTGCGAGGAAGAAGGGCCAAGCCATGCAAAAAAGTTTAGGTT
CAAGGTTATTGTGGAGATGAAGGGAGCTTGTGATGCAGTTTTAGAATGCTATGGAAATTCTCAGGCAAGAAAGAAAGTAGCAGCACAGAATGCTGCAGAAGGAGCATTAT
GGTGTTTAAAGCATTTGGGATTTTCTCCTAAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCAGACTCCTCCGTACCCTCGACGATTAAATGTCAATCTCAAAAATCTTCCTCCAATTAATCCCCGCACTGGAAATGGAAATCATCACTTCTCGATTCCGGCCAA
GTTTGAGAAATCCAGATATATTAGGCGCGTACCTCACTTTACGCCGCCGAATCACCGGCCGGAAATGAAGCCGGACACCGCTGGAGCTCTGAATACGAAGACGATTCCAG
AGGCTTCGTCGGATTCTTTCGTCGCGAAGAACGAGAACAGCCGGGAAATAGCTTCCACTTGCAGTTGCGGACATCGCTCAGCCAAAGAAGGTATCGGTACTTTAGAAAAG
AGAGCGGCAAAGTCCCTTCTGTTTGAGGTCTGCACTGCAAATTACTGGAAACCTCCTCTGTTTGAATGCTGCGAGGAAGAAGGGCCAAGCCATGCAAAAAAGTTTAGGTT
CAAGGTTATTGTGGAGATGAAGGGAGCTTGTGATGCAGTTTTAGAATGCTATGGAAATTCTCAGGCAAGAAAGAAAGTAGCAGCACAGAATGCTGCAGAAGGAGCATTAT
GGTGTTTAAAGCATTTGGGATTTTCTCCTAAA
Protein sequenceShow/hide protein sequence
MEQTPPYPRRLNVNLKNLPPINPRTGNGNHHFSIPAKFEKSRYIRRVPHFTPPNHRPEMKPDTAGALNTKTIPEASSDSFVAKNENSREIASTCSCGHRSAKEGIGTLEK
RAAKSLLFEVCTANYWKPPLFECCEEEGPSHAKKFRFKVIVEMKGACDAVLECYGNSQARKKVAAQNAAEGALWCLKHLGFSPK