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MS016251 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016251
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Genome locationscaffold9_2:1427581..1427838
RNA-Seq ExpressionMS016251
SyntenyMS016251
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]4.6e-0437.97Show/hide
Query:  INTHAACGNQESGRGMGLLLRDSSNRMMVTQSLFLPV---SYILEFCAILEGISLVRSLRYSHIIVESDSFEAIKLLSG
        +N+ AAC  + +  G+GL++RD    ++V +S+FLP+       E   ILE + L  S  Y+ ++VESD  EAI+L+ G
Subjt:  INTHAACGNQESGRGMGLLLRDSSNRMMVTQSLFLPV---SYILEFCAILEGISLVRSLRYSHIIVESDSFEAIKLLSG
TrEMBL top hitse value%identityAlignment
A0A6J1BQ49 uncharacterized protein LOC1110047862.2e-0437.97Show/hide
Query:  INTHAACGNQESGRGMGLLLRDSSNRMMVTQSLFLPV---SYILEFCAILEGISLVRSLRYSHIIVESDSFEAIKLLSG
        +N+ AAC  + +  G+GL++RD    ++V +S+FLP+       E   ILE + L  S  Y+ ++VESD  EAI+L+ G
Subjt:  INTHAACGNQESGRGMGLLLRDSSNRMMVTQSLFLPV---SYILEFCAILEGISLVRSLRYSHIIVESDSFEAIKLLSG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTAACACTCATGCAGCTTGTGGTAACCAAGAAAGTGGTAGAGGTATGGGGCTCCTCTTGAGAGACTCCTCCAATCGTATGATGGTCACTCAATCTCTTTTCCTGCCGGT
TTCTTATATTCTAGAATTTTGTGCCATTCTTGAAGGGATTAGCCTTGTCCGATCTCTCAGATACTCACACATTATTGTTGAATCGGATTCCTTTGAAGCTATCAAACTTC
TTTCGGGAAGACGAACTCATTTGGTGATGGATGGAAGT
mRNA sequenceShow/hide mRNA sequence
ATTAACACTCATGCAGCTTGTGGTAACCAAGAAAGTGGTAGAGGTATGGGGCTCCTCTTGAGAGACTCCTCCAATCGTATGATGGTCACTCAATCTCTTTTCCTGCCGGT
TTCTTATATTCTAGAATTTTGTGCCATTCTTGAAGGGATTAGCCTTGTCCGATCTCTCAGATACTCACACATTATTGTTGAATCGGATTCCTTTGAAGCTATCAAACTTC
TTTCGGGAAGACGAACTCATTTGGTGATGGATGGAAGT
Protein sequenceShow/hide protein sequence
INTHAACGNQESGRGMGLLLRDSSNRMMVTQSLFLPVSYILEFCAILEGISLVRSLRYSHIIVESDSFEAIKLLSGRRTHLVMDGS