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MS016254 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016254
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSAM domain-containing protein
Genome locationscaffold9_2:1440563..1441123
RNA-Seq ExpressionMS016254
SyntenyMS016254
Gene Ontology termsNA
InterPro domainsIPR013761 - Sterile alpha motif/pointed domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606819.1 hypothetical protein SDJN03_00161, partial [Cucurbita argyrosperma subsp. sororia]3.0e-7280.77Show/hide
Query:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD
        MDWFSWLSKTTLDPSLVYEYGLA +HNELE++DIVYFNHEFLQS+GISIAKHRLEILKLARK+ ALHPRP+TRLLLAIKRTKRCF+ LIRNFS      D
Subjt:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD

Query:  DSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGSSPAPAP-PRADSFSGPIVYNLRR-----EEEDGYWGNGVEEIR
        DSKALVVVPKSTY+GKLLKRNKKL++AKQQG  LLTNG SPAP   PR +SFSGP+VY+LRR     EEEDGYW NGVEEIR
Subjt:  DSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGSSPAPAP-PRADSFSGPIVYNLRR-----EEEDGYWGNGVEEIR

XP_022153409.1 uncharacterized protein LOC111020921 [Momordica charantia]2.6e-10099.47Show/hide
Query:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD
        MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD
Subjt:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD

Query:  DSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGSSPAPAPPRADSFSGPIVYNLRR-EEEDGYWGNGVEEIRWDTMFQNLKPT
        DSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGSSPAPAPPRADSFSGPIVYNLRR EEEDGYWGNGVEEIRWDTMFQNLKPT
Subjt:  DSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGSSPAPAPPRADSFSGPIVYNLRR-EEEDGYWGNGVEEIRWDTMFQNLKPT

XP_022948497.1 uncharacterized protein LOC111452156 [Cucurbita moschata]4.3e-7981.35Show/hide
Query:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD
        MDWFSWLSKTTLDPSLVYEYGLA +HNELE++DIVYFNHEFLQS+GISIAKHRLEILKLARK+ ALHPRP+TRLLLAIKRTKRCF+ LIRNFS      D
Subjt:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD

Query:  DSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGSSPAPAP-PRADSFSGPIVYNLRR-----EEEDGYWGNGVEEIRWDTMFQNLKPT
        DSKALVVVPKSTY+GKLLKRNKKL++AKQQG  LLTNG SPAP   PR +SFSGP+VY+LRR     EEEDG W NGVEEIRWDTMFQNLKPT
Subjt:  DSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGSSPAPAP-PRADSFSGPIVYNLRR-----EEEDGYWGNGVEEIRWDTMFQNLKPT

XP_022998747.1 uncharacterized protein LOC111493318 [Cucurbita maxima]5.0e-8081.44Show/hide
Query:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD
        MDWFSWLSKTTLDPSLVYEYGLA +HNELE++DIVYFNHEFLQS+GISIAKHRLEILKLARK+ ALHPRP+TRLLLAIKRTKRCF+ LIRNFS      D
Subjt:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD

Query:  DSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGSSPAPAP-PRADSFSGPIVYNLRR------EEEDGYWGNGVEEIRWDTMFQNLKPT
        DSKALVVVPKSTY+GKLLKRNKKL++AKQQG  LLTNG SPAP   PR +SFSGP+VY+LRR      EEEDGYW NGVEEIRWDTMFQNLKPT
Subjt:  DSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGSSPAPAP-PRADSFSGPIVYNLRR------EEEDGYWGNGVEEIRWDTMFQNLKPT

XP_023525324.1 uncharacterized protein LOC111788960 [Cucurbita pepo subsp. pepo]3.9e-8081.87Show/hide
Query:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD
        MDWFSWLSKTTLDPSLVYEYGLA +HNELE++DIVYFNHEFLQS+GISIAKHRLEILKLARK+ ALHPRP+TRLLLAIKRTKRCF+ LIRNFS      D
Subjt:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD

Query:  DSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGSSPAPAP-PRADSFSGPIVYNLRR-----EEEDGYWGNGVEEIRWDTMFQNLKPT
        DSKALVVVPKSTY+GKLLKRNKKL++AKQQG  LLTNG SPAP   PR +SFSGP+VY+LRR     EEEDGYW NGVEEIRWDTMFQNLKPT
Subjt:  DSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGSSPAPAP-PRADSFSGPIVYNLRR-----EEEDGYWGNGVEEIRWDTMFQNLKPT

TrEMBL top hitse value%identityAlignment
A0A2C9UYZ2 Uncharacterized protein2.1e-6368.37Show/hide
Query:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD
        MDWFSWL+KT L+PSLVYEYGLAF+HNELEEDDI YFNHEFLQSMGISIAKHRLEILKLARKE    P P+TR+L+AIKRTKRC +  IR +S   RR  
Subjt:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD

Query:  DSKALVVVPKSTYA----GKLLKRNKKLIIAKQQGSLLLTNGSSPAPAPPRADSFSGPIVYNLRRE-----EEDGYWGNGVEEIRWDTMFQNLKPT
        +  ALVVVP+  YA    G +LKRNKKL++A  QG LLLTNGS    + PR DSFS P+VY+L +E     ++DGYW  GVEEIRWDTMFQNLKPT
Subjt:  DSKALVVVPKSTYA----GKLLKRNKKLIIAKQQGSLLLTNGSSPAPAPPRADSFSGPIVYNLRRE-----EEDGYWGNGVEEIRWDTMFQNLKPT

A0A5A7TQT5 Uncharacterized protein2.7e-6367.54Show/hide
Query:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD
        MDWFSWLSKT+L PSLVYEYGLA A+NELE +DI+YFNHEFLQS+GISIAKHRLEILKL RKENALHPRP+TR+LLA+K+TKR F+NLIRNF+H   + +
Subjt:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD

Query:  DSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGS--SPAPAPPRADSFSGPIVYNLRRE--EEDGYWGNGVEEIRWDTMFQNLKPT
        +SKALV+VPKS+YA K+LKRNK   + K QG  LLTNGS         R   FSGPI+Y++R     E+     GVEEIRWD MFQNLKPT
Subjt:  DSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGS--SPAPAPPRADSFSGPIVYNLRRE--EEDGYWGNGVEEIRWDTMFQNLKPT

A0A6J1DIZ2 uncharacterized protein LOC1110209211.2e-10099.47Show/hide
Query:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD
        MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD
Subjt:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD

Query:  DSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGSSPAPAPPRADSFSGPIVYNLRR-EEEDGYWGNGVEEIRWDTMFQNLKPT
        DSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGSSPAPAPPRADSFSGPIVYNLRR EEEDGYWGNGVEEIRWDTMFQNLKPT
Subjt:  DSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGSSPAPAPPRADSFSGPIVYNLRR-EEEDGYWGNGVEEIRWDTMFQNLKPT

A0A6J1G9F1 uncharacterized protein LOC1114521562.1e-7981.35Show/hide
Query:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD
        MDWFSWLSKTTLDPSLVYEYGLA +HNELE++DIVYFNHEFLQS+GISIAKHRLEILKLARK+ ALHPRP+TRLLLAIKRTKRCF+ LIRNFS      D
Subjt:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD

Query:  DSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGSSPAPAP-PRADSFSGPIVYNLRR-----EEEDGYWGNGVEEIRWDTMFQNLKPT
        DSKALVVVPKSTY+GKLLKRNKKL++AKQQG  LLTNG SPAP   PR +SFSGP+VY+LRR     EEEDG W NGVEEIRWDTMFQNLKPT
Subjt:  DSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGSSPAPAP-PRADSFSGPIVYNLRR-----EEEDGYWGNGVEEIRWDTMFQNLKPT

A0A6J1K8U0 uncharacterized protein LOC1114933182.4e-8081.44Show/hide
Query:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD
        MDWFSWLSKTTLDPSLVYEYGLA +HNELE++DIVYFNHEFLQS+GISIAKHRLEILKLARK+ ALHPRP+TRLLLAIKRTKRCF+ LIRNFS      D
Subjt:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRAD

Query:  DSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGSSPAPAP-PRADSFSGPIVYNLRR------EEEDGYWGNGVEEIRWDTMFQNLKPT
        DSKALVVVPKSTY+GKLLKRNKKL++AKQQG  LLTNG SPAP   PR +SFSGP+VY+LRR      EEEDGYW NGVEEIRWDTMFQNLKPT
Subjt:  DSKALVVVPKSTYAGKLLKRNKKLIIAKQQGSLLLTNGSSPAPAP-PRADSFSGPIVYNLRR------EEEDGYWGNGVEEIRWDTMFQNLKPT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G15760.1 Sterile alpha motif (SAM) domain-containing protein1.1e-4549.26Show/hide
Query:  WFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHP----RPVTRLLLAIKRTKRCFSNLIRNFSHAHRR
        WFSWLS+T L+PSL++EYGL+F+ NELE +DI YF+HEFLQSMGISIAKHRLEILKLAR++    P    R ++R++ AIK+T++C S+ +R +      
Subjt:  WFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHP----RPVTRLLLAIKRTKRCFSNLIRNFSHAHRR

Query:  ADDSKALVVVPKST------YAGKLLKRNKKLII-------AKQQGSLLLTNGSSPAPAPPRADSFSGPIVYNLRREEEDGY-WGNGVEEIRWDTMFQNL
        +  S+ALV+VPK T      + G  LKRNK+ ++        ++Q  LLLTNG+     P R DSFS P+V++   ++E  Y      E+I+WD+MFQNL
Subjt:  ADDSKALVVVPKST------YAGKLLKRNKKLII-------AKQQGSLLLTNGSSPAPAPPRADSFSGPIVYNLRREEEDGY-WGNGVEEIRWDTMFQNL

Query:  KPT
        KPT
Subjt:  KPT

AT1G80520.1 Sterile alpha motif (SAM) domain-containing protein3.5e-4753.23Show/hide
Query:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHP---RPVTRLLLAIKRTKRCFSNLIRNFSHAHR
        MDWFSWLS+T L+ SL+YEYGL+F++NELE +DI YFNHEFLQSMGISIAKHRLEILKLAR++    P   R + R+L+AIK+T +CFS  +R +    R
Subjt:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHP---RPVTRLLLAIKRTKRCFSNLIRNFSHAHR

Query:  RADDSKALVVVPKSTYA---GKLLKRNKKLIIAKQQGS------LLLTNGSSPAPAPPRADSFSGPIVYNLRREEEDGYWGNG--VEEIRWDTMFQNLKP
        R + S+ALVVV +ST +   G+     KK ++    G+      LLLTNG+     P R DSFS P V +   E++D +WGN    E+I+WD+MFQNLKP
Subjt:  RADDSKALVVVPKSTYA---GKLLKRNKKLIIAKQQGS------LLLTNGSSPAPAPPRADSFSGPIVYNLRREEEDGYWGNG--VEEIRWDTMFQNLKP

Query:  T
        T
Subjt:  T

AT2G12462.1 BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT1G15760.1)4.8e-2053.41Show/hide
Query:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKE----NALHPRPVTRLLLA--IKRTK
        MDWFSWLSKT LDP+L YEYGL FA  +L+ +DI  FNH FL+ +G+++ KHR+EILKL+++E    ++ + RPV+  L++  IK TK
Subjt:  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKE----NALHPRPVTRLLLA--IKRTK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGGTTCTCTTGGCTTTCGAAAACAACCCTAGATCCTTCACTGGTGTACGAGTACGGCCTCGCCTTCGCCCACAACGAGCTCGAGGAAGACGACATCGTCTACTT
CAACCACGAATTTCTCCAGAGCATGGGAATCTCCATAGCCAAGCACCGTCTCGAGATCCTCAAGCTCGCTCGCAAGGAGAACGCCCTCCATCCGCGCCCGGTCACTCGTC
TTCTGCTCGCAATCAAGAGGACCAAGCGCTGTTTCTCCAATCTGATTCGGAATTTCTCTCACGCTCACCGCCGCGCCGACGACAGCAAAGCCCTAGTCGTCGTCCCCAAA
TCCACCTACGCCGGGAAATTGCTGAAGAGGAACAAGAAATTGATCATTGCCAAACAGCAGGGGAGCTTGCTGCTCACCAACGGATCGAGTCCGGCGCCGGCGCCGCCGCG
AGCAGATAGCTTTTCCGGCCCGATCGTGTACAATCTGCGGAGGGAGGAGGAGGATGGATATTGGGGAAATGGCGTGGAGGAGATCAGGTGGGATACAATGTTCCAGAATT
TGAAACCTACT
mRNA sequenceShow/hide mRNA sequence
ATGGATTGGTTCTCTTGGCTTTCGAAAACAACCCTAGATCCTTCACTGGTGTACGAGTACGGCCTCGCCTTCGCCCACAACGAGCTCGAGGAAGACGACATCGTCTACTT
CAACCACGAATTTCTCCAGAGCATGGGAATCTCCATAGCCAAGCACCGTCTCGAGATCCTCAAGCTCGCTCGCAAGGAGAACGCCCTCCATCCGCGCCCGGTCACTCGTC
TTCTGCTCGCAATCAAGAGGACCAAGCGCTGTTTCTCCAATCTGATTCGGAATTTCTCTCACGCTCACCGCCGCGCCGACGACAGCAAAGCCCTAGTCGTCGTCCCCAAA
TCCACCTACGCCGGGAAATTGCTGAAGAGGAACAAGAAATTGATCATTGCCAAACAGCAGGGGAGCTTGCTGCTCACCAACGGATCGAGTCCGGCGCCGGCGCCGCCGCG
AGCAGATAGCTTTTCCGGCCCGATCGTGTACAATCTGCGGAGGGAGGAGGAGGATGGATATTGGGGAAATGGCGTGGAGGAGATCAGGTGGGATACAATGTTCCAGAATT
TGAAACCTACT
Protein sequenceShow/hide protein sequence
MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENALHPRPVTRLLLAIKRTKRCFSNLIRNFSHAHRRADDSKALVVVPK
STYAGKLLKRNKKLIIAKQQGSLLLTNGSSPAPAPPRADSFSGPIVYNLRREEEDGYWGNGVEEIRWDTMFQNLKPT