; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS016261 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016261
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein FAR1-RELATED SEQUENCE
Genome locationscaffold9_2:1512253..1512591
RNA-Seq ExpressionMS016261
SyntenyMS016261
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR004330 - FAR1 DNA binding domain
IPR031052 - FHY3/FAR1 family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606815.1 Protein FAR1-RELATED SEQUENCE 6, partial [Cucurbita argyrosperma subsp. sororia]1.0e-5999.12Show/hide
Query:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN
        GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKK+SEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN
Subjt:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN

Query:  HLINPTSGKFYKS
        HLINPTSGKFYKS
Subjt:  HLINPTSGKFYKS

KAG7036521.1 Protein FAR1-RELATED SEQUENCE 6, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-5999.12Show/hide
Query:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN
        GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKK+SEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN
Subjt:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN

Query:  HLINPTSGKFYKS
        HLINPTSGKFYKS
Subjt:  HLINPTSGKFYKS

XP_022948397.1 protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Cucurbita moschata]1.0e-5999.12Show/hide
Query:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN
        GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKK+SEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN
Subjt:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN

Query:  HLINPTSGKFYKS
        HLINPTSGKFYKS
Subjt:  HLINPTSGKFYKS

XP_022998133.1 protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Cucurbita maxima]1.0e-5999.12Show/hide
Query:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN
        GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKK+SEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN
Subjt:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN

Query:  HLINPTSGKFYKS
        HLINPTSGKFYKS
Subjt:  HLINPTSGKFYKS

XP_023523301.1 protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Cucurbita pepo subsp. pepo]1.0e-5999.12Show/hide
Query:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN
        GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKK+SEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN
Subjt:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN

Query:  HLINPTSGKFYKS
        HLINPTSGKFYKS
Subjt:  HLINPTSGKFYKS

TrEMBL top hitse value%identityAlignment
A0A1S3BYS6 Protein FAR1-RELATED SEQUENCE1.1e-5998.23Show/hide
Query:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN
        GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKE+YRGKLSCSSAGFKK+SEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN
Subjt:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN

Query:  HLINPTSGKFYKS
        HLINPTSGKFYKS
Subjt:  HLINPTSGKFYKS

A0A5D3E0Z6 Protein FAR1-RELATED SEQUENCE1.1e-5998.23Show/hide
Query:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN
        GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKE+YRGKLSCSSAGFKK+SEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN
Subjt:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN

Query:  HLINPTSGKFYKS
        HLINPTSGKFYKS
Subjt:  HLINPTSGKFYKS

A0A6J1DHG7 uncharacterized protein LOC1110209506.4e-6099.12Show/hide
Query:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN
        GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN
Subjt:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN

Query:  HLINPTSGKFYKS
        HLINPT GKFYKS
Subjt:  HLINPTSGKFYKS

A0A6J1G944 Protein FAR1-RELATED SEQUENCE4.9e-6099.12Show/hide
Query:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN
        GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKK+SEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN
Subjt:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN

Query:  HLINPTSGKFYKS
        HLINPTSGKFYKS
Subjt:  HLINPTSGKFYKS

A0A6J1KFY1 Protein FAR1-RELATED SEQUENCE4.9e-6099.12Show/hide
Query:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN
        GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKK+SEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN
Subjt:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHN

Query:  HLINPTSGKFYKS
        HLINPTSGKFYKS
Subjt:  HLINPTSGKFYKS

SwissProt top hitse value%identityAlignment
Q6NQJ7 Protein FAR1-RELATED SEQUENCE 49.1e-1136.19Show/hide
Query:  MEFESYEDVYYFYSCYAKEQGFG-VRVSNTWYRKSKERYRGKLSCSSAGFKKRS-EANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSG
        MEFE++ED Y FY  YAK  GFG  ++S+   R SKE    K SC   G K++S +A  PR   + GC A +  +     +W +     +HNH + P   
Subjt:  MEFESYEDVYYFYSCYAKEQGFG-VRVSNTWYRKSKERYRGKLSCSSAGFKKRS-EANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSG

Query:  KFYKS
         +++S
Subjt:  KFYKS

Q9M8J3 Protein FAR1-RELATED SEQUENCE 73.8e-0932.35Show/hide
Query:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRG-KLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDH
        G++ L P VG+EF++ E+   +Y+ YA   GF VR    +  ++       +  CS  GF+  S         RTGCPA I+ +  DT +W + +++ +H
Subjt:  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRG-KLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDH

Query:  NH
        NH
Subjt:  NH

Q9S793 Protein FAR1-RELATED SEQUENCE 81.2e-2349.54Show/hide
Query:  PPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTW-YRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLIN
        PP  GMEFESY+D Y FY+ YA+E GF +RV ++W  R SKE+    L C+  GFK   +A+  R ETRTGC AMI+ RL+   RW++ +V+LDHNH  +
Subjt:  PPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTW-YRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLIN

Query:  PTSGKFYKS
        P      KS
Subjt:  PTSGKFYKS

Q9SSQ4 Protein FAR1-RELATED SEQUENCE 62.5e-3261.11Show/hide
Query:  PAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWY-RKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINP
        PAVGMEFESY+D Y +Y+CYA E GF VRV N+W+ R+SKE+Y   L CSS GFK+ ++ NR R ETRTGCPAMI+ R +D++RWR++EV LDHNHL+  
Subjt:  PAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWY-RKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINP

Query:  TSGKFYKS
           K YKS
Subjt:  TSGKFYKS

Q9SZL8 Protein FAR1-RELATED SEQUENCE 52.2e-0934.86Show/hide
Query:  LPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNT-WYRKSKERYRGKLSCSSAGFK-------KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVE
        L P  G+EFES E    FY+ YA+  GF  RVS++   R+     + +  C+  GF+       K  E  RPR  TR GC A +  ++ D+ +W +    
Subjt:  LPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNT-WYRKSKERYRGKLSCSSAGFK-------KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVE

Query:  LDHNHLINP
         DHNH + P
Subjt:  LDHNHLINP

Arabidopsis top hitse value%identityAlignment
AT1G52520.1 FAR1-related sequence 61.7e-3361.11Show/hide
Query:  PAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWY-RKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINP
        PAVGMEFESY+D Y +Y+CYA E GF VRV N+W+ R+SKE+Y   L CSS GFK+ ++ NR R ETRTGCPAMI+ R +D++RWR++EV LDHNHL+  
Subjt:  PAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWY-RKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINP

Query:  TSGKFYKS
           K YKS
Subjt:  TSGKFYKS

AT1G80010.1 FAR1-related sequence 88.7e-2549.54Show/hide
Query:  PPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTW-YRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLIN
        PP  GMEFESY+D Y FY+ YA+E GF +RV ++W  R SKE+    L C+  GFK   +A+  R ETRTGC AMI+ RL+   RW++ +V+LDHNH  +
Subjt:  PPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTW-YRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLIN

Query:  PTSGKFYKS
        P      KS
Subjt:  PTSGKFYKS

AT3G59470.1 Far-red impaired responsive (FAR1) family protein1.4e-1138.32Show/hide
Query:  PAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRG-----KLSCSSAGFK---KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELD
        P VG EFES    + FY+ YA + GF +RVS    + S+ R+ G     +L C+  G++   KR +  R R ETR GC AMI  R  ++ +W I +   +
Subjt:  PAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRG-----KLSCSSAGFK---KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELD

Query:  HNHLINP
        HNH + P
Subjt:  HNHLINP

AT3G59470.2 Far-red impaired responsive (FAR1) family protein1.4e-1138.32Show/hide
Query:  PAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRG-----KLSCSSAGFK---KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELD
        P VG EFES    + FY+ YA + GF +RVS    + S+ R+ G     +L C+  G++   KR +  R R ETR GC AMI  R  ++ +W I +   +
Subjt:  PAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRG-----KLSCSSAGFK---KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELD

Query:  HNHLINP
        HNH + P
Subjt:  HNHLINP

AT4G38180.1 FAR1-related sequence 51.6e-1034.86Show/hide
Query:  LPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNT-WYRKSKERYRGKLSCSSAGFK-------KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVE
        L P  G+EFES E    FY+ YA+  GF  RVS++   R+     + +  C+  GF+       K  E  RPR  TR GC A +  ++ D+ +W +    
Subjt:  LPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNT-WYRKSKERYRGKLSCSSAGFK-------KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVE

Query:  LDHNHLINP
         DHNH + P
Subjt:  LDHNHLINP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGGGAGAATCCCCTGCCTCCTGCTGTTGGAATGGAGTTTGAGTCTTATGAGGATGTGTACTATTTCTATAGTTGCTATGCAAAAGAACAAGGATTTGGAGTCCGAGTCAG
TAACACATGGTATAGAAAGAGTAAGGAAAGATACCGAGGAAAACTTAGCTGCAGCAGTGCAGGTTTCAAGAAGAGAAGTGAAGCGAATCGTCCAAGACCAGAAACGAGAA
CTGGTTGCCCAGCTATGATAAAATTTAGGTTGATGGATACCAGAAGATGGAGAATAATTGAAGTTGAGCTTGACCACAATCACCTGATCAACCCAACTAGTGGAAAATTT
TACAAATCT
mRNA sequenceShow/hide mRNA sequence
GGGGAGAATCCCCTGCCTCCTGCTGTTGGAATGGAGTTTGAGTCTTATGAGGATGTGTACTATTTCTATAGTTGCTATGCAAAAGAACAAGGATTTGGAGTCCGAGTCAG
TAACACATGGTATAGAAAGAGTAAGGAAAGATACCGAGGAAAACTTAGCTGCAGCAGTGCAGGTTTCAAGAAGAGAAGTGAAGCGAATCGTCCAAGACCAGAAACGAGAA
CTGGTTGCCCAGCTATGATAAAATTTAGGTTGATGGATACCAGAAGATGGAGAATAATTGAAGTTGAGCTTGACCACAATCACCTGATCAACCCAACTAGTGGAAAATTT
TACAAATCT
Protein sequenceShow/hide protein sequence
GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKF
YKS