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MS016269 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016269
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUbiquitin_4 domain-containing protein
Genome locationscaffold9_2:1554639..1554734
RNA-Seq ExpressionMS016269
SyntenyMS016269
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
InterPro domainsIPR029071 - Ubiquitin-like domain superfamily
IPR039690 - U11/U12 small nuclear ribonucleoprotein 25kDa protein
IPR040610 - SNRNP25, ubiquitin-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV75436.1 hypothetical protein CFOL_v3_18915, partial [Cephalotus follicularis]8.8e-0981.25Show/hide
Query:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
        VWGHFCLCYEGQ L +DKACI++FGIKDGDQ+
Subjt:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
XP_022153470.1 uncharacterized protein LOC111020973 isoform X1 [Momordica charantia]4.2e-1196.88Show/hide
Query:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
        VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQ+
Subjt:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
XP_022153473.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Momordica charantia]4.2e-1196.88Show/hide
Query:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
        VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQ+
Subjt:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
XP_038904269.1 uncharacterized protein LOC120090621 isoform X1 [Benincasa hispida]1.8e-0984.38Show/hide
Query:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
        +WGHFCLCYEG+ LIDDK CIRVFGIKDGDQ+
Subjt:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
XP_038904272.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Benincasa hispida]1.8e-0984.38Show/hide
Query:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
        +WGHFCLCYEG+ LIDDK CIRVFGIKDGDQ+
Subjt:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
TrEMBL top hitse value%identityAlignment
A0A0A0KTJ1 Ubiquitin_4 domain-containing protein2.8e-0875Show/hide
Query:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
        +WGHFCLCYEG+ LIDDK CI+ +GIKDGDQ+
Subjt:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
A0A1Q3C569 Ubiquitin_4 domain-containing protein (Fragment)4.3e-0981.25Show/hide
Query:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
        VWGHFCLCYEGQ L +DKACI++FGIKDGDQ+
Subjt:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
A0A6J1DGY1 uncharacterized protein LOC111020973 isoform X12.0e-1196.88Show/hide
Query:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
        VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQ+
Subjt:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
A0A6J1DHJ6 U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X22.0e-1196.88Show/hide
Query:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
        VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQ+
Subjt:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
A0A6J1KGI2 uncharacterized protein LOC1114930242.8e-0884.38Show/hide
Query:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
        VWGHFCLCYEG+ LIDDKA IRV GIKDGDQ+
Subjt:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G80060.1 Ubiquitin-like superfamily protein1.2e-0862.5Show/hide
Query:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
        VWGHFCLCY  Q L++DK  IR  G+ DGDQ+
Subjt:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
AT4G32270.1 Ubiquitin-like superfamily protein5.7e-0656.25Show/hide
Query:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
        VWG FCL YE + LI++   +  FGIKDGDQ+
Subjt:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
AT4G32270.2 Ubiquitin-like superfamily protein5.7e-0656.25Show/hide
Query:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
        VWG FCL YE + LI++   +  FGIKDGDQ+
Subjt:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
AT5G25340.1 Ubiquitin-like superfamily protein1.2e-0865.62Show/hide
Query:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV
        VWGHFCLC+ GQ LI D  CI  +G+KDGD+V
Subjt:  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTATGGGGACATTTCTGTTTATGTTACGAAGGCCAAAATCTTATTGATGACAAAGCATGCATTAGAGTTTTTGGCATTAAAGATGGTGATCAGGTT
mRNA sequenceShow/hide mRNA sequence
GTATGGGGACATTTCTGTTTATGTTACGAAGGCCAAAATCTTATTGATGACAAAGCATGCATTAGAGTTTTTGGCATTAAAGATGGTGATCAGGTT
Protein sequenceShow/hide protein sequence
VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV