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MS016275 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016275
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description(1->3)-beta-glucan endohydrolase
Genome locationscaffold9_2:1643313..1643492
RNA-Seq ExpressionMS016275
SyntenyMS016275
Gene Ontology termsGO:0042138 - meiotic DNA double-strand break formation (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583341.1 Protein DOUBLE-STRAND BREAK FORMATION, partial [Cucurbita argyrosperma subsp. sororia]3.6e-0868.33Show/hide
Query:  RFDDSTLRILEFVSVSKDVKSVI-VAKPFKELLRFESDSIIRKT-KKTDDQKLIVFQFLV
        R DDSTLRILEF S SKD  S++ V    KELLRFES SIIR+T +KTDDQKL+V +FLV
Subjt:  RFDDSTLRILEFVSVSKDVKSVI-VAKPFKELLRFESDSIIRKT-KKTDDQKLIVFQFLV

XP_022154860.1 uncharacterized protein LOC111022017 isoform X1 [Momordica charantia]5.9e-1176.67Show/hide
Query:  RFDDSTLRILEFVSVSKDVKSVIVAKP-FKELLRFESDSIIRKT-KKTDDQKLIVFQFLV
        R DDSTL+ILEFVSVSKDVKS+I AK   KELLRFES SIIR+T +KTDDQKL+V +FLV
Subjt:  RFDDSTLRILEFVSVSKDVKSVIVAKP-FKELLRFESDSIIRKT-KKTDDQKLIVFQFLV

XP_022154861.1 uncharacterized protein LOC111022017 isoform X2 [Momordica charantia]5.9e-1176.67Show/hide
Query:  RFDDSTLRILEFVSVSKDVKSVIVAKP-FKELLRFESDSIIRKT-KKTDDQKLIVFQFLV
        R DDSTL+ILEFVSVSKDVKS+I AK   KELLRFES SIIR+T +KTDDQKL+V +FLV
Subjt:  RFDDSTLRILEFVSVSKDVKSVIVAKP-FKELLRFESDSIIRKT-KKTDDQKLIVFQFLV

XP_023520164.1 uncharacterized protein LOC111783465 isoform X1 [Cucurbita pepo subsp. pepo]1.2e-0870Show/hide
Query:  RFDDSTLRILEFVSVSKDVKSVI-VAKPFKELLRFESDSIIRKT-KKTDDQKLIVFQFLV
        RFDDSTLRILEF S SKD  S++ V    KELLRFES SIIR+T  KTDDQKL+V +FLV
Subjt:  RFDDSTLRILEFVSVSKDVKSVI-VAKPFKELLRFESDSIIRKT-KKTDDQKLIVFQFLV

XP_023520165.1 uncharacterized protein LOC111783465 isoform X2 [Cucurbita pepo subsp. pepo]1.2e-0870Show/hide
Query:  RFDDSTLRILEFVSVSKDVKSVI-VAKPFKELLRFESDSIIRKT-KKTDDQKLIVFQFLV
        RFDDSTLRILEF S SKD  S++ V    KELLRFES SIIR+T  KTDDQKL+V +FLV
Subjt:  RFDDSTLRILEFVSVSKDVKSVI-VAKPFKELLRFESDSIIRKT-KKTDDQKLIVFQFLV

TrEMBL top hitse value%identityAlignment
A0A1S3CL48 uncharacterized protein LOC103502216 isoform X15.0e-0866.67Show/hide
Query:  RFDDSTLRILEFVSVSKDVKSVI-VAKPFKELLRFESDSIIRKT-KKTDDQKLIVFQFLV
        RFDDSTLRILE    SKD  S+  V   F ELLRFES SIIR+T +KTDDQKL+V +FLV
Subjt:  RFDDSTLRILEFVSVSKDVKSVI-VAKPFKELLRFESDSIIRKT-KKTDDQKLIVFQFLV

A0A6J1DKU7 uncharacterized protein LOC111022017 isoform X12.8e-1176.67Show/hide
Query:  RFDDSTLRILEFVSVSKDVKSVIVAKP-FKELLRFESDSIIRKT-KKTDDQKLIVFQFLV
        R DDSTL+ILEFVSVSKDVKS+I AK   KELLRFES SIIR+T +KTDDQKL+V +FLV
Subjt:  RFDDSTLRILEFVSVSKDVKSVIVAKP-FKELLRFESDSIIRKT-KKTDDQKLIVFQFLV

A0A6J1DPZ7 uncharacterized protein LOC111022017 isoform X22.8e-1176.67Show/hide
Query:  RFDDSTLRILEFVSVSKDVKSVIVAKP-FKELLRFESDSIIRKT-KKTDDQKLIVFQFLV
        R DDSTL+ILEFVSVSKDVKS+I AK   KELLRFES SIIR+T +KTDDQKL+V +FLV
Subjt:  RFDDSTLRILEFVSVSKDVKSVIVAKP-FKELLRFESDSIIRKT-KKTDDQKLIVFQFLV

A0A6J1I136 uncharacterized protein LOC111469552 isoform X22.9e-0868.33Show/hide
Query:  RFDDSTLRILEFVSVSKDVKSVI-VAKPFKELLRFESDSIIRKT-KKTDDQKLIVFQFLV
        RFDDSTLRILEF S SKD    + V    KELLRFES SIIR+T +KTDDQKL+V +FLV
Subjt:  RFDDSTLRILEFVSVSKDVKSVI-VAKPFKELLRFESDSIIRKT-KKTDDQKLIVFQFLV

A0A6J1I645 uncharacterized protein LOC111469552 isoform X12.9e-0868.33Show/hide
Query:  RFDDSTLRILEFVSVSKDVKSVI-VAKPFKELLRFESDSIIRKT-KKTDDQKLIVFQFLV
        RFDDSTLRILEF S SKD    + V    KELLRFES SIIR+T +KTDDQKL+V +FLV
Subjt:  RFDDSTLRILEFVSVSKDVKSVI-VAKPFKELLRFESDSIIRKT-KKTDDQKLIVFQFLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGATTCGACGATTCAACCTTGCGAATCCTGGAATTTGTTTCCGTTTCCAAAGACGTGAAGTCGGTGATTGTAGCCAAACCATTTAAAGAACTACTCAGATTTGAATCTGA
TTCTATCATTCGCAAAACAAAAAAAACTGATGATCAAAAGCTTATAGTCTTTCAGTTTCTGGTT
mRNA sequenceShow/hide mRNA sequence
AGATTCGACGATTCAACCTTGCGAATCCTGGAATTTGTTTCCGTTTCCAAAGACGTGAAGTCGGTGATTGTAGCCAAACCATTTAAAGAACTACTCAGATTTGAATCTGA
TTCTATCATTCGCAAAACAAAAAAAACTGATGATCAAAAGCTTATAGTCTTTCAGTTTCTGGTT
Protein sequenceShow/hide protein sequence
RFDDSTLRILEFVSVSKDVKSVIVAKPFKELLRFESDSIIRKTKKTDDQKLIVFQFLV