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MS016281 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016281
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein Ycf2
Genome locationscaffold1407:79969..80133
RNA-Seq ExpressionMS016281
SyntenyMS016281
Gene Ontology termsGO:0009570 - chloroplast stroma (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QXE45812.1 Ycf2 protein [Haloragodendron glandulosum]2.4e-2287.27Show/hide
Query:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
        I++DL NHIVWA RIWRPWGFLFDCIERSN+LRFPYWARSFR K+IIYDEENELQ
Subjt:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
QXE45977.1 hypothetical RF21 [Haloragis erecta]2.4e-2287.27Show/hide
Query:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
        I++DL NHIVWA RIWRPWGFLFDCIERSN+LRFPYWARSFR K+IIYDEENELQ
Subjt:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
YP_008963522.1 hypothetical chloroplast RF21 [Penthorum chinense]2.4e-2287.27Show/hide
Query:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
        I++DL NHIVWA RIWRPWGFLFDCIERSN+LRFPYWARSFR K+IIYDEENELQ
Subjt:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
YP_009490302.1 hypothetical chloroplast RF21 [Myriophyllum spicatum]2.4e-2287.27Show/hide
Query:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
        I++DL NHIVWA RIWRPWGFLFDCIERSN+LRFPYWARSFR K+IIYDEENELQ
Subjt:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
YP_009859950.1 hypothetical chloroplast RF21 [Myriophyllum aquaticum]2.4e-2287.27Show/hide
Query:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
        I++DL NHIVWA RIWRPWGFLFDCIERSN+LRFPYWARSFR K+IIYDEENELQ
Subjt:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
TrEMBL top hitse value%identityAlignment
A0A2S1P5P3 Protein Ycf21.2e-2287.27Show/hide
Query:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
        I++DL NHIVWA RIWRPWGFLFDCIERSN+LRFPYWARSFR K+IIYDEENELQ
Subjt:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
A0A6M8Y625 Protein Ycf21.2e-2287.27Show/hide
Query:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
        I++DL NHIVWA RIWRPWGFLFDCIERSN+LRFPYWARSFR K+IIYDEENELQ
Subjt:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
A0A7U0KL52 Ycf2 protein1.3e-2185.45Show/hide
Query:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
        I++DL NHIVWA RIWRPWGFLFDCIER NEL FPYWARSFR K+IIYDEENELQ
Subjt:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
V5IZ91 Protein Ycf21.2e-2287.27Show/hide
Query:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
        I++DL NHIVWA RIWRPWGFLFDCIERSN+LRFPYWARSFR K+IIYDEENELQ
Subjt:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
W8ELZ4 Protein Ycf29.9e-2285.45Show/hide
Query:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
        I++DL NHIVWA RIWRPWGFLFDCIER+NEL FPYWARSFRSK+IIYDEE+ELQ
Subjt:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
SwissProt top hitse value%identityAlignment
B1A978 Protein Ycf23.9e-2381.82Show/hide
Query:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
        I++DL NHIVWA RIWRPWGFLFDCIER NEL FPYWARSFR K+IIYDE++ELQ
Subjt:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
B2LMN7 Protein Ycf23.0e-2381.82Show/hide
Query:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
        I++DL NHIVWA RIWRPWGFLFDCIER NEL FPYW+RSFR K+IIYDEE+ELQ
Subjt:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
Q0ZIV6 Protein Ycf27.8e-2483.64Show/hide
Query:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
        I++DL NHIVWA RIWRPWGFLFDCIER+NEL FPYWARSFR K+IIYDEE+ELQ
Subjt:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
Q332R7 Protein Ycf23.9e-2380Show/hide
Query:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
        I++DL NHIVWA RIWRPWGFLFDCIER NEL FPYW+RSFR K+I+YDEE+ELQ
Subjt:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
Q68RU4 Protein Ycf25.0e-2380Show/hide
Query:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
        I++DL NHIVWA RIWRPWGFLFDCIER NEL FPYW+RSFR K+I+YDEE+ELQ
Subjt:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
Arabidopsis top hitse value%identityAlignment
ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core7.0e-2076.36Show/hide
Query:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
        I++DL NHIVWA RIWRP GFLFDCIER NEL FPY A SFR K+IIYDE+ ELQ
Subjt:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core7.0e-2076.36Show/hide
Query:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ
        I++DL NHIVWA RIWRP GFLFDCIER NEL FPY A SFR K+IIYDE+ ELQ
Subjt:  IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATAGATGATGATTTATTAAATCACATAGTTTGGGCTCGTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGTCCAATGAATTGAGATTTCCCTATTG
GGCTAGGTCATTTCGGAGTAAGCAGATCATTTATGATGAAGAGAACGAGCTTCAA
mRNA sequenceShow/hide mRNA sequence
ATAGATGATGATTTATTAAATCACATAGTTTGGGCTCGTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGTCCAATGAATTGAGATTTCCCTATTG
GGCTAGGTCATTTCGGAGTAAGCAGATCATTTATGATGAAGAGAACGAGCTTCAA
Protein sequenceShow/hide protein sequence
IDDDLLNHIVWARRIWRPWGFLFDCIERSNELRFPYWARSFRSKQIIYDEENELQ