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MS016291 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016291
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpeptide chain release factor PrfB2, chloroplastic
Genome locationscaffold1407:143387..143622
RNA-Seq ExpressionMS016291
SyntenyMS016291
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135582.1 peptide chain release factor PrfB2, chloroplastic [Cucumis sativus]6.8e-0743.75Show/hide
Query:  IFTLRKQICNSI-----SILISQPR---------RSAYNCVLLNHDSLVFGGTNFKNIYGFPFCSLHLFS-------SVADKLTVEGIIGNQWTIL
        IFT RKQ+CN I     ++ IS+ R          +A N  L N      G T+F  I+GFPF +L LFS       S +D LTVEGI+GN+WTIL
Subjt:  IFTLRKQICNSI-----SILISQPR---------RSAYNCVLLNHDSLVFGGTNFKNIYGFPFCSLHLFS-------SVADKLTVEGIIGNQWTIL

XP_022159815.1 peptide chain release factor PrfB2, chloroplastic isoform X1 [Momordica charantia]3.4e-0659.62Show/hide
Query:  HDSLVFGGTNFKNIYGFPFCSLHLFS-------SVADKLTVEGIIGNQWTIL
        HD+L  G  NFK I GFPFCS  LFS       S +D LTV+GIIGN+WTIL
Subjt:  HDSLVFGGTNFKNIYGFPFCSLHLFS-------SVADKLTVEGIIGNQWTIL

XP_022159817.1 peptide chain release factor PrfB2, chloroplastic isoform X2 [Momordica charantia]3.4e-0659.62Show/hide
Query:  HDSLVFGGTNFKNIYGFPFCSLHLFS-------SVADKLTVEGIIGNQWTIL
        HD+L  G  NFK I GFPFCS  LFS       S +D LTV+GIIGN+WTIL
Subjt:  HDSLVFGGTNFKNIYGFPFCSLHLFS-------SVADKLTVEGIIGNQWTIL

XP_038878322.1 peptide chain release factor PrfB2, chloroplastic isoform X1 [Benincasa hispida]3.4e-0642.71Show/hide
Query:  IFTLRKQICNSI-----SILISQPR---------RSAYNCVLLNHDSLVFGGTNFKNIYGFPFCSLHLFS-------SVADKLTVEGIIGNQWTIL
        IFT +K++CN I     + LIS+ R          +A +CVL N      G ++F  I GFPF +L LFS       S +D LTVEGI+GN+WTIL
Subjt:  IFTLRKQICNSI-----SILISQPR---------RSAYNCVLLNHDSLVFGGTNFKNIYGFPFCSLHLFS-------SVADKLTVEGIIGNQWTIL

XP_038878326.1 peptide chain release factor PrfB2, chloroplastic isoform X2 [Benincasa hispida]3.4e-0642.71Show/hide
Query:  IFTLRKQICNSI-----SILISQPR---------RSAYNCVLLNHDSLVFGGTNFKNIYGFPFCSLHLFS-------SVADKLTVEGIIGNQWTIL
        IFT +K++CN I     + LIS+ R          +A +CVL N      G ++F  I GFPF +L LFS       S +D LTVEGI+GN+WTIL
Subjt:  IFTLRKQICNSI-----SILISQPR---------RSAYNCVLLNHDSLVFGGTNFKNIYGFPFCSLHLFS-------SVADKLTVEGIIGNQWTIL

TrEMBL top hitse value%identityAlignment
A0A0A0LVX3 RF_PROK_I domain-containing protein3.3e-0743.75Show/hide
Query:  IFTLRKQICNSI-----SILISQPR---------RSAYNCVLLNHDSLVFGGTNFKNIYGFPFCSLHLFS-------SVADKLTVEGIIGNQWTIL
        IFT RKQ+CN I     ++ IS+ R          +A N  L N      G T+F  I+GFPF +L LFS       S +D LTVEGI+GN+WTIL
Subjt:  IFTLRKQICNSI-----SILISQPR---------RSAYNCVLLNHDSLVFGGTNFKNIYGFPFCSLHLFS-------SVADKLTVEGIIGNQWTIL

A0A1S4DY60 peptide chain release factor PrfB2, chloroplastic2.1e-0643.75Show/hide
Query:  IFTLRKQICNSI-----SILISQPR---------RSAYNCVLLNHDSLVFGGTNFKNIYGFPFCSLHLFS-------SVADKLTVEGIIGNQWTIL
        IFT RKQ+CN I     ++LIS+ R          +A N  L NH     G  +F  I G PF +L LFS       S +D LTVEGI+GN+WTIL
Subjt:  IFTLRKQICNSI-----SILISQPR---------RSAYNCVLLNHDSLVFGGTNFKNIYGFPFCSLHLFS-------SVADKLTVEGIIGNQWTIL

A0A5D3CEK4 Peptide chain release factor PrfB22.1e-0643.75Show/hide
Query:  IFTLRKQICNSI-----SILISQPR---------RSAYNCVLLNHDSLVFGGTNFKNIYGFPFCSLHLFS-------SVADKLTVEGIIGNQWTIL
        IFT RKQ+CN I     ++LIS+ R          +A N  L NH     G  +F  I G PF +L LFS       S +D LTVEGI+GN+WTIL
Subjt:  IFTLRKQICNSI-----SILISQPR---------RSAYNCVLLNHDSLVFGGTNFKNIYGFPFCSLHLFS-------SVADKLTVEGIIGNQWTIL

A0A6J1DZU3 peptide chain release factor PrfB2, chloroplastic isoform X11.6e-0659.62Show/hide
Query:  HDSLVFGGTNFKNIYGFPFCSLHLFS-------SVADKLTVEGIIGNQWTIL
        HD+L  G  NFK I GFPFCS  LFS       S +D LTV+GIIGN+WTIL
Subjt:  HDSLVFGGTNFKNIYGFPFCSLHLFS-------SVADKLTVEGIIGNQWTIL

A0A6J1E0V5 peptide chain release factor PrfB2, chloroplastic isoform X21.6e-0659.62Show/hide
Query:  HDSLVFGGTNFKNIYGFPFCSLHLFS-------SVADKLTVEGIIGNQWTIL
        HD+L  G  NFK I GFPFCS  LFS       S +D LTV+GIIGN+WTIL
Subjt:  HDSLVFGGTNFKNIYGFPFCSLHLFS-------SVADKLTVEGIIGNQWTIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGTTCATTTTTACTCTTAGAAAACAAATATGCAATAGTATCTCAATCTTAATCTCACAGCCTCGACGTTCTGCTTATAATTGTGTCCTTCTGAATCACGATTCTTTGGT
CTTTGGTGGTACAAATTTTAAGAACATTTATGGATTCCCATTTTGTTCGTTGCACTTGTTTTCTTCAGTGGCAGATAAGCTTACTGTCGAAGGAATTATTGGAAATCAAT
GGACGATTCTA
mRNA sequenceShow/hide mRNA sequence
GTGTTCATTTTTACTCTTAGAAAACAAATATGCAATAGTATCTCAATCTTAATCTCACAGCCTCGACGTTCTGCTTATAATTGTGTCCTTCTGAATCACGATTCTTTGGT
CTTTGGTGGTACAAATTTTAAGAACATTTATGGATTCCCATTTTGTTCGTTGCACTTGTTTTCTTCAGTGGCAGATAAGCTTACTGTCGAAGGAATTATTGGAAATCAAT
GGACGATTCTA
Protein sequenceShow/hide protein sequence
VFIFTLRKQICNSISILISQPRRSAYNCVLLNHDSLVFGGTNFKNIYGFPFCSLHLFSSVADKLTVEGIIGNQWTIL