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MS016293 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016293
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionarabinogalactan peptide 22-like
Genome locationscaffold1407:152020..152317
RNA-Seq ExpressionMS016293
SyntenyMS016293
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579545.1 Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia]1.3e-1272.73Show/hide
Query:  VAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISF
        V + V FVL   LP  A    +S++PAQPPA SDGTSIDQGIAY LMLLALVLTYIIHSADLSISF
Subjt:  VAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISF

KAG7017004.1 Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma]3.8e-1272.73Show/hide
Query:  VAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISF
        V   V FVL   LP  A    +S++PAQPPA SDGTSIDQGIAY LMLLALVLTYIIHSADLSISF
Subjt:  VAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISF

XP_004143956.1 arabinogalactan protein 41 [Cucumis sativus]5.4e-1168.85Show/hide
Query:  VAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS
        + FV+   L   + A  +S+SPAQPPAT DGTSIDQGIAY LMLLALVLTYIIHSADL +S
Subjt:  VAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS

XP_008437371.1 PREDICTED: arabinogalactan peptide 22-like [Cucumis melo]7.1e-1170.49Show/hide
Query:  VAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS
        + FV+   L   + A  +S+SPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSAD  +S
Subjt:  VAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS

XP_022146078.1 arabinogalactan peptide 22-like [Momordica charantia]6.6e-2598.57Show/hide
Query:  LGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISF
        LGILVAVAVAFVLGAFLPVQAHAQPESMSPAQP ATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISF
Subjt:  LGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISF

TrEMBL top hitse value%identityAlignment
A0A0A0KK44 Uncharacterized protein2.6e-1168.85Show/hide
Query:  VAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS
        + FV+   L   + A  +S+SPAQPPAT DGTSIDQGIAY LMLLALVLTYIIHSADL +S
Subjt:  VAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS

A0A1S3ATI9 arabinogalactan peptide 22-like3.4e-1170.49Show/hide
Query:  VAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS
        + FV+   L   + A  +S+SPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSAD  +S
Subjt:  VAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS

A0A5D3C2F1 Arabinogalactan peptide 22-like3.4e-1170.49Show/hide
Query:  VAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS
        + FV+   L   + A  +S+SPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSAD  +S
Subjt:  VAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS

A0A6J1CXM0 arabinogalactan peptide 22-like3.2e-2598.57Show/hide
Query:  LGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISF
        LGILVAVAVAFVLGAFLPVQAHAQPESMSPAQP ATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISF
Subjt:  LGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISF

A0A6J1K4A3 arabinogalactan peptide 22-like1.0e-1069.23Show/hide
Query:  VAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS
        V VAVAFVL    P  A A   S+SPAQPP  SDGTS+DQGIAY LMLLAL+LTYIIH A+L IS
Subjt:  VAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 161.7e-0758.18Show/hide
Query:  FLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISF
        F  + + A  +S++PA P  TSDGTSIDQGIAY LM++ALVLTY+IH  D S S+
Subjt:  FLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISF

Q8L9T8 Arabinogalactan protein 414.9e-0760.34Show/hide
Query:  VAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIH
        V+  V+ +    LP+ AHAQ  S +PA P  TSDGT+IDQGIAY LML+ALVLTY+IH
Subjt:  VAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIH

Q9FK16 Arabinogalactan protein 222.1e-0556.45Show/hide
Query:  LGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIH
        L IL    +  V+   LP+   AQ  S SPA P  TSDGTSIDQGIAY LM++AL LTY IH
Subjt:  LGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIH

Q9M373 Arabinogalactan protein 202.9e-0755.38Show/hide
Query:  VAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS
        VAV   F    F  +   A  +S++PA P  TSDGTSIDQGIAY LM++ALVLTY+IH  D S S
Subjt:  VAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 161.2e-0858.18Show/hide
Query:  FLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISF
        F  + + A  +S++PA P  TSDGTSIDQGIAY LM++ALVLTY+IH  D S S+
Subjt:  FLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISF

AT3G61640.1 arabinogalactan protein 202.1e-0855.38Show/hide
Query:  VAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS
        VAV   F    F  +   A  +S++PA P  TSDGTSIDQGIAY LM++ALVLTY+IH  D S S
Subjt:  VAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS

AT5G24105.1 arabinogalactan protein 413.5e-0860.34Show/hide
Query:  VAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIH
        V+  V+ +    LP+ AHAQ  S +PA P  TSDGT+IDQGIAY LML+ALVLTY+IH
Subjt:  VAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIH

AT5G53250.1 arabinogalactan protein 221.5e-0656.45Show/hide
Query:  LGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIH
        L IL    +  V+   LP+   AQ  S SPA P  TSDGTSIDQGIAY LM++AL LTY IH
Subjt:  LGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGGGAATTTTGGTTGCTGTTGCTGTAGCCTTTGTTTTGGGTGCCTTTTTGCCGGTTCAAGCTCATGCTCAACCCGAGTCAATGTCTCCAGCCCAACCCCCTGCTACTAG
CGATGGGACGAGCATAGATCAAGGGATTGCGTATGCATTAATGTTGTTGGCCTTGGTTCTCACTTACATTATCCATTCAGCTGACCTCTCTATCAGTTTT
mRNA sequenceShow/hide mRNA sequence
TTGGGAATTTTGGTTGCTGTTGCTGTAGCCTTTGTTTTGGGTGCCTTTTTGCCGGTTCAAGCTCATGCTCAACCCGAGTCAATGTCTCCAGCCCAACCCCCTGCTACTAG
CGATGGGACGAGCATAGATCAAGGGATTGCGTATGCATTAATGTTGTTGGCCTTGGTTCTCACTTACATTATCCATTCAGCTGACCTCTCTATCAGTTTT
Protein sequenceShow/hide protein sequence
LGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISF