; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS016337 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016337
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionacyl-coenzyme A thioesterase 13
Genome locationscaffold1038:138018..139437
RNA-Seq ExpressionMS016337
SyntenyMS016337
Gene Ontology termsGO:0031047 - gene silencing by RNA (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0030014 - CCR4-NOT complex (cellular component)
GO:0047617 - acyl-CoA hydrolase activity (molecular function)
InterPro domainsIPR003736 - Phenylacetic acid degradation-related domain
IPR006683 - Thioesterase domain
IPR029069 - HotDog domain superfamily
IPR039298 - Acyl-coenzyme A thioesterase 13


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571321.1 Acyl-coenzyme A thioesterase 13, partial [Cucurbita argyrosperma subsp. sororia]1.3e-6582.58Show/hide
Query:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS
        MEKTKRYLEKHDD DDR + S ID LP RFYE FVMT LRVDLIEPGR+VCSLKVPARLLNENNSLHGGA+A+LVDCIGS A+KT G +TTGVS+EIN+S
Subjt:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS

Query:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL
        Y+DAAYLDEEIEI++KVLR+GKTIAV+NVELR+K NGKI+AQGRHTKYLAISSKL
Subjt:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL

XP_022158814.1 acyl-coenzyme A thioesterase 13 isoform X1 [Momordica charantia]1.3e-7698.71Show/hide
Query:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS
        MEKTKRYLEKHDDGDDRNL SAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS
Subjt:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS

Query:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL
        YMDAAYLDE+IEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL
Subjt:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL

XP_022158815.1 acyl-coenzyme A thioesterase 13 isoform X2 [Momordica charantia]2.6e-7498.06Show/hide
Query:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS
        MEKTKRYLEKHDDGDDRNL SAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS
Subjt:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS

Query:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL
        YMDAAYLD  IEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL
Subjt:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL

XP_022931994.1 acyl-coenzyme A thioesterase 13 [Cucurbita moschata]3.8e-6581.94Show/hide
Query:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS
        MEKTKRYLEKHDD DDR + S+ID LP RFYE FVMT LRVDLIEPGR+VCSLKVPARLLNENNSLHGGA+A+LVDCIGS A+KT G +TTGVS+EIN+S
Subjt:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS

Query:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL
        Y+DAAYLDEEIEI+++VLR+GKTIAV+NVELR+K NGKI+AQGRHTKYLAISSKL
Subjt:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL

XP_022973825.1 acyl-coenzyme A thioesterase 13 [Cucurbita maxima]8.5e-6581.29Show/hide
Query:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS
        MEKTKRYLEKHDD DDR + S ID LP RFYE FVMT +RVDLIEPGR+VCSLKVPARLLNENNSLHGGA+A+LVDCIGS A+ T G +TTGVS+EIN+S
Subjt:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS

Query:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL
        Y+DAAYLDEEIEI++KVLR+GKTIAV+NVELR+K NGKI+AQGRHTKYLAISSKL
Subjt:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL

TrEMBL top hitse value%identityAlignment
A0A5D3BST3 CCR4-NOT transcription complex subunit 119.4e-6281.29Show/hide
Query:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS
        MEKTKRYLEK   GDD    SAID LP RFYE F+MTG+RVDLI+PGR++CSLKVPARLLNENNSLHGGA+A+LVDCIGSAA+KT G +TTGVS+EIN+S
Subjt:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS

Query:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL
        Y+DAAYLDEEIEI+SKVLRMGKTIAV+NVELR+KSNGKI+AQGRHTKYLA SSKL
Subjt:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL

A0A6J1DWW4 acyl-coenzyme A thioesterase 13 isoform X21.3e-7498.06Show/hide
Query:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS
        MEKTKRYLEKHDDGDDRNL SAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS
Subjt:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS

Query:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL
        YMDAAYLD  IEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL
Subjt:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL

A0A6J1E0I3 acyl-coenzyme A thioesterase 13 isoform X16.1e-7798.71Show/hide
Query:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS
        MEKTKRYLEKHDDGDDRNL SAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS
Subjt:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS

Query:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL
        YMDAAYLDE+IEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL
Subjt:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL

A0A6J1EVT6 acyl-coenzyme A thioesterase 131.8e-6581.94Show/hide
Query:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS
        MEKTKRYLEKHDD DDR + S+ID LP RFYE FVMT LRVDLIEPGR+VCSLKVPARLLNENNSLHGGA+A+LVDCIGS A+KT G +TTGVS+EIN+S
Subjt:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS

Query:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL
        Y+DAAYLDEEIEI+++VLR+GKTIAV+NVELR+K NGKI+AQGRHTKYLAISSKL
Subjt:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL

A0A6J1ICC5 acyl-coenzyme A thioesterase 134.1e-6581.29Show/hide
Query:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS
        MEKTKRYLEKHDD DDR + S ID LP RFYE FVMT +RVDLIEPGR+VCSLKVPARLLNENNSLHGGA+A+LVDCIGS A+ T G +TTGVS+EIN+S
Subjt:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS

Query:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL
        Y+DAAYLDEEIEI++KVLR+GKTIAV+NVELR+K NGKI+AQGRHTKYLAISSKL
Subjt:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL

SwissProt top hitse value%identityAlignment
P34419 Putative esterase F42H10.61.1e-1136.89Show/hide
Query:  IEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVSYMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQG
        +   ++VC + V  + LN   +LHGG TA L D I + A+          SVE+ VSY+    + + +EI + VL++G+T+A  + E R+KS+GK+ A+G
Subjt:  IEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVSYMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQG

Query:  RHT
        +HT
Subjt:  RHT

P87304 Putative esterase C31F10.023.0e-1235Show/hide
Query:  YEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVSYMDA-AYLDEEIEIESKVLRMGKTIAVVNV
        ++  V++ +++    PG V CSLK+    LN   +LHGG  AAL D  GS A+ + G+  +GVS+++N +++ +   L   I + +K  R+G  IA  +V
Subjt:  YEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVSYMDA-AYLDEEIEIESKVLRMGKTIAVVNV

Query:  ELRKKSNGKIVAQGRHTKYL
        +    SN ++ A+GRHTK++
Subjt:  ELRKKSNGKIVAQGRHTKYL

Q5R833 Acyl-coenzyme A thioesterase 132.5e-1947.12Show/hide
Query:  PGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVSYMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRH
        PG+V+C +KV     N   +LHGG TA LVD I + A+        GVSV++N++YM  A L E+I I + VL+ GKT+A  +V+L  K+ GK++AQGRH
Subjt:  PGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVSYMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRH

Query:  TKYL
        TK+L
Subjt:  TKYL

Q9CQR4 Acyl-coenzyme A thioesterase 139.5e-1944.23Show/hide
Query:  PGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVSYMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRH
        P +++C +KV  +  N+  +LHGG TA LVD I + A+        GVSV++N++YM  A + EEI I + +L+ GKT+A  +V+L  K+ GK++AQGRH
Subjt:  PGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVSYMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRH

Query:  TKYL
        TK+L
Subjt:  TKYL

Q9NPJ3 Acyl-coenzyme A thioesterase 132.5e-1947.12Show/hide
Query:  PGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVSYMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRH
        PG+V+C +KV     N   +LHGG TA LVD I + A+        GVSV++N++YM  A L E+I I + VL+ GKT+A  +V+L  K+ GK++AQGRH
Subjt:  PGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVSYMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRH

Query:  TKYL
        TK+L
Subjt:  TKYL

Arabidopsis top hitse value%identityAlignment
AT1G04290.1 Thioesterase superfamily protein1.2e-4864.52Show/hide
Query:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS
        +E  K+YLE   D D++     +  LP RF E+FV  GL+VDLIEPGR+VCS+K+P  LLN    LHGGATA LVD IGSA I T G S +GVSVEINVS
Subjt:  MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVS

Query:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL
        Y+DAA+LDEEIEIESK LR+GK +AVV+VELRKK+ GKI+AQGRHTKY A  S L
Subjt:  YMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL

AT2G29590.1 Thioesterase superfamily protein2.0e-1937.97Show/hide
Query:  MEKTKRYLEKHDD-GDDRNLPSAIDDL--PLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEI
        MEK   YL+  D+  DD   P   + L     FYE F + G+RV+ +EPG + CS KVP RL + + +L  GA A LVD +G A +   G+  + VSV++
Subjt:  MEKTKRYLEKHDD-GDDRNLPSAIDDL--PLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEI

Query:  NVSYMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL
        +++++  A L EE+EI S++L          V +R K  G+I+A+GRH+ +   +SKL
Subjt:  NVSYMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL

AT3G16175.1 Thioesterase superfamily protein2.4e-0928.95Show/hide
Query:  YEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVSYMDAAYLDEEIEIESKVLRMGKTIAVVNVE
        +E  ++ GL +  +  G + C L V   ++ E+ S + G   A++D IG++A+ + G     +SV++N S+   A + E +EIE++V      +    +E
Subjt:  YEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVSYMDAAYLDEEIEIESKVLRMGKTIAVVNVE

Query:  LRKKSNGKIVAQGR
        +R++++G+I+A GR
Subjt:  LRKKSNGKIVAQGR

AT3G61200.1 Thioesterase superfamily protein4.9e-1033.63Show/hide
Query:  IEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSV-EINVSYMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQ
        I  GRV CS+ V   + N    LHGGA A++ + +  A +KT       + + E+++SY+ +A +  E+ +E  V+R G+ ++VV VE + K   K+   
Subjt:  IEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSV-EINVSYMDAAYLDEEIEIESKVLRMGKTIAVVNVELRKKSNGKIVAQ

Query:  GRHTKYLAISSKL
         R T Y +  SKL
Subjt:  GRHTKYLAISSKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGACGAAGAGGTACCTGGAGAAGCACGACGATGGCGATGATCGGAACCTTCCGTCCGCCATTGATGACCTTCCCCTCCGATTCTACGAACAGTTCGTCATGAC
TGGTCTCCGCGTTGATCTCATCGAGCCTGGTCGCGTCGTTTGCTCTCTCAAAGTACCCGCTCGATTGCTCAACGAGAATAATTCCTTGCACGGGGGAGCCACGGCGGCGC
TTGTGGATTGTATTGGTTCCGCAGCGATAAAGACTTTCGGCGTTTCCACCACCGGAGTCTCCGTCGAAATTAATGTTTCGTACATGGATGCCGCTTATCTCGATGAGGAG
ATCGAGATCGAGAGCAAGGTTTTGCGAATGGGAAAGACCATTGCAGTGGTCAATGTTGAATTGAGGAAGAAAAGCAATGGTAAAATTGTTGCTCAGGGTCGCCACACCAA
GTACCTTGCCATCTCCAGCAAGTTG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGACGAAGAGGTACCTGGAGAAGCACGACGATGGCGATGATCGGAACCTTCCGTCCGCCATTGATGACCTTCCCCTCCGATTCTACGAACAGTTCGTCATGAC
TGGTCTCCGCGTTGATCTCATCGAGCCTGGTCGCGTCGTTTGCTCTCTCAAAGTACCCGCTCGATTGCTCAACGAGAATAATTCCTTGCACGGGGGAGCCACGGCGGCGC
TTGTGGATTGTATTGGTTCCGCAGCGATAAAGACTTTCGGCGTTTCCACCACCGGAGTCTCCGTCGAAATTAATGTTTCGTACATGGATGCCGCTTATCTCGATGAGGAG
ATCGAGATCGAGAGCAAGGTTTTGCGAATGGGAAAGACCATTGCAGTGGTCAATGTTGAATTGAGGAAGAAAAGCAATGGTAAAATTGTTGCTCAGGGTCGCCACACCAA
GTACCTTGCCATCTCCAGCAAGTTG
Protein sequenceShow/hide protein sequence
MEKTKRYLEKHDDGDDRNLPSAIDDLPLRFYEQFVMTGLRVDLIEPGRVVCSLKVPARLLNENNSLHGGATAALVDCIGSAAIKTFGVSTTGVSVEINVSYMDAAYLDEE
IEIESKVLRMGKTIAVVNVELRKKSNGKIVAQGRHTKYLAISSKL