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MS016343 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016343
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem II CP43 reaction center protein
Genome locationscaffold1038:306518..306649
RNA-Seq ExpressionMS016343
SyntenyMS016343
Gene Ontology termsGO:0009767 - photosynthetic electron transport chain (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
InterPro domainsIPR036001 - Photosystem antenna protein-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EFH63363.1 photosystem II CP43 chlorophyll apoprotein [Arabidopsis lyrata subsp. lyrata]4.9e-1072.92Show/hide
Query:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
        G+GP     DTF YFVSRVLHLISS VL FGG+YHALLGP+ L+ESFP
Subjt:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
KAB2052558.1 hypothetical protein ES319_A12G129500v1 [Gossypium barbadense]2.4e-0976.09Show/hide
Query:  GIGPD--DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
        GIG D  DTF YFVS VLHLISS VL FGG+YHALLGP+ L+ESFP
Subjt:  GIGPD--DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
QHN87170.1 Photosystem II CP43 reaction center protein [Arachis hypogaea]1.4e-0972.92Show/hide
Query:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
        G+GP     DTFSYFVS VLHLISS VL FGG+YHALLGP  L+ESFP
Subjt:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
YP_009569269.1 photosystem II CP43 chlorophyll apoprotein [Ceratostigma willmottianum]1.4e-0972.92Show/hide
Query:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
        G+GP     DTFSYFVS VLHLISS VL FGG+YHALLGP  L+ESFP
Subjt:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
YP_009932840.1 PSII 43 KDa protein [Solms-laubachia calcicola]3.2e-0970.83Show/hide
Query:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
        G+GP     DTF+YFVS VLHLISS VL FGG+YHALLGP  L+ESFP
Subjt:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
TrEMBL top hitse value%identityAlignment
A0A411JPX8 Photosystem II CP43 reaction center protein6.9e-1072.92Show/hide
Query:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
        G+GP     DTFSYFVS VLHLISS VL FGG+YHALLGP  L+ESFP
Subjt:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
A0A5J5TDH7 Uncharacterized protein1.2e-0976.09Show/hide
Query:  GIGPD--DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
        GIG D  DTF YFVS VLHLISS VL FGG+YHALLGP+ L+ESFP
Subjt:  GIGPD--DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
A0A7H1A7U7 Photosystem II CP43 reaction center protein1.5e-0970.83Show/hide
Query:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
        G+GP     DTF+YFVS VLHLISS VL FGG+YHALLGP  L+ESFP
Subjt:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
A0A7T1TVE9 Photosystem II CP43 chlorophyll apoprotein1.5e-0972.92Show/hide
Query:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
        GIGP     DTF YFVS VLHLISS+VL FGG+YHALLGP  L+ESFP
Subjt:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
D7KUZ9 Photosystem II CP43 chlorophyll apoprotein2.4e-1072.92Show/hide
Query:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
        G+GP     DTF YFVSRVLHLISS VL FGG+YHALLGP+ L+ESFP
Subjt:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
SwissProt top hitse value%identityAlignment
A1E9Z4 Photosystem II CP43 reaction center protein7.1e-1270.83Show/hide
Query:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
        G+GP     DTF YFVS VLHLISS VL FGG+YHALLGP  L+ESFP
Subjt:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
A4QJJ5 Photosystem II CP43 reaction center protein5.5e-1272.92Show/hide
Query:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
        GIGP     DTF YFVS VLHLISS VL FGG+YHALLGP  L+ESFP
Subjt:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
A9LYI1 Photosystem II CP43 reaction center protein7.1e-1270.83Show/hide
Query:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
        G+GP     DTF YFVS VLHLISS VL FGG+YHALLGP  L+ESFP
Subjt:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
Q3V538 Photosystem II CP43 reaction center protein7.1e-1270.83Show/hide
Query:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
        G+GP     DTF YFVS VLHLISS VL FGG+YHALLGP  L+ESFP
Subjt:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
Q70Y07 Photosystem II CP43 reaction center protein7.1e-1270.83Show/hide
Query:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
        G+GP     DTF YFVS VLHLISS VL FGG+YHALLGP  L+ESFP
Subjt:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
Arabidopsis top hitse value%identityAlignment
ATCG00280.1 photosystem II reaction center protein C5.1e-1370.83Show/hide
Query:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP
        G+GP     DTF YFVS VLHLISS VL FGG+YHALLGP  L+ESFP
Subjt:  GIGPD----DTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGGATAGGTCCTGACGACACATTTTCGTATTTTGTGTCGAGAGTACTTCACTTGATTTCCTCCACAGTATTGGATTTTGGTGGTATGTATCATGCACTTCTAGGACCAAG
ACCCTTAAAAGAATCTTTTCCG
mRNA sequenceShow/hide mRNA sequence
GGGATAGGTCCTGACGACACATTTTCGTATTTTGTGTCGAGAGTACTTCACTTGATTTCCTCCACAGTATTGGATTTTGGTGGTATGTATCATGCACTTCTAGGACCAAG
ACCCTTAAAAGAATCTTTTCCG
Protein sequenceShow/hide protein sequence
GIGPDDTFSYFVSRVLHLISSTVLDFGGMYHALLGPRPLKESFP