CuGenDBv2

Gene ID	MS016344
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Eukaryotic translation initiation factor 6
Genome location	scaffold1038:315279..319587
RNA-Seq Expression	MS016344
Synteny	MS016344
Gene Ontology terms	GO:0000054 - ribosomal subunit export from nucleus (biological process) GO:0000460 - maturation of 5.8S rRNA (biological process) GO:0000470 - maturation of LSU-rRNA (biological process) GO:0006413 - translational initiation (biological process) GO:0042256 - mature ribosome assembly (biological process) GO:1902626 - assembly of large subunit precursor of preribosome (biological process) GO:0005730 - nucleolus (cellular component) GO:0005829 - cytosol (cellular component) GO:0030687 - preribosome, large subunit precursor (cellular component) GO:0003743 - translation initiation factor activity (molecular function) GO:0043022 - ribosome binding (molecular function) GO:0043023 - ribosomal large subunit binding (molecular function)
InterPro domains	IPR002769 - Translation initiation factor IF6

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022147757.1 eukaryotic translation initiation factor 6-2 [Momordica charantia]

1.6e-115

91.7

Show/hide

Query:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        LMFENSCE+GVFSKLTNAYCLVAIGGSENFYSAFE+ELGGVIPVVK SIDGTRIIGRLCA               ELQHLRNSLPDQVVVQRIQERLSAL
Subjt:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GNTIACNDHVAL HTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDW A
Subjt:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

XP_022931983.1 eukaryotic translation initiation factor 6-2-like [Cucurbita moschata]

2.7e-115

91.29

Show/hide

Query:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        LMFENSCE+GVFSKLTNAYCLVAIGGSENFYSAFE+ELGGVIPVVK SIDGTRIIGRLCA               ELQHLRNSLPDQVVVQRIQERLSAL
Subjt:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GNTI+CNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGL ANDWTA
Subjt:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        FCGSDTTATELSVIESVFKLRE QPSSIVDEMRKSLIDSYV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

XP_022973842.1 eukaryotic translation initiation factor 6-2 [Cucurbita maxima]

9.2e-116

91.7

Show/hide

Query:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        LMFENSCE+GVFSKLTNAYCLVAIGGSENFYSAFE+ELGGVIPVVK SIDGTRIIGRLCA               ELQHLRNSLPDQVVVQRIQERLSAL
Subjt:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GNTI+CNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGL ANDWTA
Subjt:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

XP_038880643.1 eukaryotic translation initiation factor 6-2-like [Benincasa hispida]

2.0e-115

91.29

Show/hide

Query:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        LMFENSCE+GVFSKLTNAYCLVAIGGSENFYSAFE ELGGVIPVVK SIDGTRIIGRLCA               ELQHLRNSLPDQVVVQRIQERLSAL
Subjt:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTS+EDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDW A
Subjt:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        FCGSDTTATELSVIESVFKLREAQPSSIV+EMRKSLIDSYV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

XP_038900322.1 eukaryotic translation initiation factor 6-2 [Benincasa hispida]

1.2e-115

91.29

Show/hide

Query:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        LMFENSCE+GVFSKLTNAYCLVAIGGSENFYS FE ELGGVIPVVK SIDGTRIIGRLCA               ELQHLRNSLPDQVVVQRIQERLSAL
Subjt:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTS+EDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
Subjt:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        FCGSDTTATELSVIESVFKLREAQPSSIV+EMRKSLIDSYV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D392 Eukaryotic translation initiation factor 6

7.6e-116

91.7

Show/hide

Query:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        LMFENSCE+GVFSKLTNAYCLVAIGGSENFYSAFE+ELGGVIPVVK SIDGTRIIGRLCA               ELQHLRNSLPDQVVVQRIQERLSAL
Subjt:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GNTIACNDHVAL HTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDW A
Subjt:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

A0A6J1F0A8 Eukaryotic translation initiation factor 6

1.3e-115

91.29

Show/hide

Query:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        LMFENSCE+GVFSKLTNAYCLVAIGGSENFYSAFE+ELGGVIPVVK SIDGTRIIGRLCA               ELQHLRNSLPDQVVVQRIQERLSAL
Subjt:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GNTI+CNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGL ANDWTA
Subjt:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        FCGSDTTATELSVIESVFKLRE QPSSIVDEMRKSLIDSYV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

A0A6J1G8F7 Eukaryotic translation initiation factor 6

3.8e-115

90.87

Show/hide

Query:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        LMFENSCE+GVFSKLTNAYCLVAIGGSENFYS+FEAEL GVIPVVK SIDGTRIIGRLCA               ELQHLRNSLPDQVVVQRIQERLSAL
Subjt:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGL  NDWTA
Subjt:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        FCGSDTTATELSV+ESVFKLREAQPSSIVDEMRKSLIDSYV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

A0A6J1I8L9 Eukaryotic translation initiation factor 6

4.4e-116

91.7

Show/hide

Query:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        LMFENSCE+GVFSKLTNAYCLVAIGGSENFYSAFE+ELGGVIPVVK SIDGTRIIGRLCA               ELQHLRNSLPDQVVVQRIQERLSAL
Subjt:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GNTI+CNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGL ANDWTA
Subjt:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

A0A6J1L2F0 Eukaryotic translation initiation factor 6

3.8e-115

90.87

Show/hide

Query:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        LMFENSCE+GVFSKLTNAYCLVAIGGSENFYS+FEAEL GVIPVVK SIDGTRIIGRLCA               ELQHLRNSLPDQVVVQRIQERLSAL
Subjt:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGL  NDWTA
Subjt:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        FCGSDTTATELSV+ESVFKLREAQPSSIVDEMRKSLIDSYV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

SwissProt top hits

e value

%identity

Alignment

O55135 Eukaryotic translation initiation factor 6

1.1e-90

71.73

Show/hide

Query:  FENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGN
        FEN+CEVG F+KLTNAYCLVAIGGSENFYS FE EL   IPVV  SI G RIIGR+C                ELQH+RNSLPD V ++R++ERLSALGN
Subjt:  FENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGN

Query:  TIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFC
           CND+VAL H DLDRETEE++ADVL VEVFRQTVA  VLVGSYC F+N+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVIAAG+  NDW AFC
Subjt:  TIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFC

Query:  GSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDS
        G DTT+TELSV+ESVFKL EA+PS+I   MR SLIDS
Subjt:  GSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDS

P56537 Eukaryotic translation initiation factor 6

1.8e-90

71.31

Show/hide

Query:  FENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGN
        FEN+CE+G F+KLTN YCLVAIGGSENFYS FE EL   IPVV  SI G RIIGR+C                ELQH+RNSLPD V ++R++ERLSALGN
Subjt:  FENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGN

Query:  TIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFC
           CND+VAL H DLDRETEE++ADVL VEVFRQTVA  VLVGSYC F+N+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVIAAG+  NDW AFC
Subjt:  TIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFC

Query:  GSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDS
        G DTT+TELSV+ESVFKL EAQPS+I   MR SLIDS
Subjt:  GSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDS

Q3KRD8 Eukaryotic translation initiation factor 6

3.1e-90

71.31

Show/hide

Query:  FENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGN
        FEN+CEVG F+KLTN YCLVAIGGSENFYS FE EL   IPVV  SI G RIIGR+C                ELQH+RNSLPD V ++R++ERLSALGN
Subjt:  FENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGN

Query:  TIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFC
           CND+VAL H DLDRETEE++ADVL VEVFRQTVA  VLVGSYC F+N+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVIAAG+  NDW AFC
Subjt:  TIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFC

Query:  GSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDS
        G DTT+TELSV+ESVFKL EA+PS+I   MR SLIDS
Subjt:  GSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDS

Q9M060 Eukaryotic translation initiation factor 6-2

1.5e-108

81.74

Show/hide

Query:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        L FEN+CEVGVFSKLTNAYCLVAIGGSENFYSAFE+EL  VIP+VK SI GTRIIGRLCA               ELQHLRNSLPDQVVVQRI ERLSAL
Subjt:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GN IACND+VAL HTDLD+ETEE+IADVLGVEVFRQT+AGN+LVGSYC+ +N+GG+VHPHTS+EDL+ELSTLLQVPLVAGTVNRGSEVIAAG+T NDWT+
Subjt:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        FCGSDTTATELSVI+S+FKLREAQPSSIVDEMRKSLID+YV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

Q9TU47 Eukaryotic translation initiation factor 6

6.2e-91

71.31

Show/hide

Query:  FENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGN
        FEN+CE+G F+KLTN+YCLVAIGGSENFYS FE EL G IPVV  SI G RIIGR+C                ELQH+RN LPD V ++R++ERLSALGN
Subjt:  FENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGN

Query:  TIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFC
           CND+VAL H DLDRETEE++ADVL VEVFRQTVA  VLVGSYC F+N+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVIAAG+  NDW AFC
Subjt:  TIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFC

Query:  GSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDS
        G DTT+TELSV+ESVFKL EAQPS+I   MR SLIDS
Subjt:  GSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDS

Arabidopsis top hits

e value

%identity

Alignment

AT2G39820.1 Translation initiation factor IF6

9.2e-82

62.61

Show/hide

Query:  NSCEVGVFSKLTNAYCLV-AIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGNT
        N+CE+GVFSKLTNAYCLV A   S NF++ +E++L GVIP+V  SI G+  IG LC                ELQHLR+SLPD+VVVQRI+E + ALGN 
Subjt:  NSCEVGVFSKLTNAYCLV-AIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGNT

Query:  IACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCG
        IACND+VAL H  L+++TEE+I+DVLGVEV+RQT+A N LVGSYCS +N GG+VH +T++E++ EL+ L+QVPLVAGTVNRGS+VI+AGLT NDWTAFCG
Subjt:  IACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCG

Query:  SDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        SDTTA ELSV+ ++FKL ++QP  +  EMRKSLID+YV
Subjt:  SDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

AT3G55620.1 Translation initiation factor IF6

1.0e-109

81.74

Show/hide

Query:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        L FEN+CEVGVFSKLTNAYCLVAIGGSENFYSAFE+EL  VIP+VK SI GTRIIGRLCA               ELQHLRNSLPDQVVVQRI ERLSAL
Subjt:  LMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GN IACND+VAL HTDLD+ETEE+IADVLGVEVFRQT+AGN+LVGSYC+ +N+GG+VHPHTS+EDL+ELSTLLQVPLVAGTVNRGSEVIAAG+T NDWT+
Subjt:  GNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        FCGSDTTATELSVI+S+FKLREAQPSSIVDEMRKSLID+YV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

Sequences

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CDS sequence

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TTTCCTCTAGGGCTGATGTTTGAGAACTCATGTGAAGTTGGGGTTTTCTCCAAACTCACTAATGCTTATTGTTTGGTTGCAATTGGTGGCTCTGAGAACTTCTACAGTGC
CTTTGAGGCTGAATTGGGTGGTGTCATTCCAGTTGTTAAAGTATCCATTGATGGCACTCGCATTATTGGCCGCCTCTGTGCTGAACTTCAACACTTGAGGAACAGTCTAC
CCGACCAAGTTGTTGTTCAACGTATACAAGAGAGACTGTCTGCTTTAGGGAATACAATTGCTTGTAATGATCATGTTGCTCTTACACATACCGATCTTGACCGGGAAACT
GAGGAGCTCATTGCTGATGTTCTTGGAGTAGAGGTCTTTAGGCAGACAGTAGCCGGTAACGTTCTCGTGGGAAGCTACTGTAGTTTCACAAATAGGGGTGGCTTGGTTCA
TCCTCATACGTCTATTGAAGATTTGGACGAACTATCAACCCTTCTTCAGGTCCCTTTAGTGGCTGGAACTGTGAATCGTGGCAGTGAAGTGATTGCTGCTGGCTTAACAG
CAAATGACTGGACTGCATTTTGTGGTTCGGACACCACTGCAACCGAGTTGTCAGTGATCGAGAGCGTTTTCAAATTGAGGGAGGCTCAACCAAGTTCCATTGTTGACGAG
ATGAGGAAGTCACTAATAGATAGTTACGTT

mRNA sequence

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Protein sequence

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FPLGLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGVIPVVKVSIDGTRIIGRLCAELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTDLDRET
EELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVDE
MRKSLIDSYV

MS016344 (gene) of Bitter gourd (TR) v1 genome