; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS016347 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016347
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSAUR-like auxin-responsive protein family
Genome locationscaffold1038:350006..350260
RNA-Seq ExpressionMS016347
SyntenyMS016347
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8399813.1 hypothetical protein HHK36_015684 [Tetracentron sinense]3.6e-0949.37Show/hide
Query:  KSFEMKLIEKLQELLRKPKSKKDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI
        KS E  L+EK        +   D   +YVGEE+KRYVVPL  LSS +FQ+LL +FEDEI +  +G + LPCST +FE +
Subjt:  KSFEMKLIEKLQELLRKPKSKKDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI

KAF8402501.1 hypothetical protein HHK36_010586 [Tetracentron sinense]1.1e-1049.33Show/hide
Query:  IEKLQELLRKPKSK-----KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFE
        ++K +E +R  KSK     +    +YVGEE+ ++VVPLKCLSS +FQ+LLN+FEDEI ++ EG + +PCST +F+
Subjt:  IEKLQELLRKPKSK-----KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFE

PON94429.1 Small auxin-up RNA [Trema orientale]4.4e-0742.22Show/hide
Query:  FNSFLVKSFEMKLIEKLQELLRKPKS-----KKDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI
        F   + K    K   K  +  R PK       +  F +YVGEE KRYVVPL  LS+ IFQ+LLN+F +EI +  +  + +PCS  +FESI
Subjt:  FNSFLVKSFEMKLIEKLQELLRKPKS-----KKDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI

TXG57808.1 hypothetical protein EZV62_015637 [Acer yangbiense]1.5e-0740.54Show/hide
Query:  KLIEKLQELLRKPKSKKDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI
        K+  K +   RK ++ K HFVVYVGEE++R+VVPL  L +  FQ LL+K  +E     + +++LPC    F+++
Subjt:  KLIEKLQELLRKPKSKKDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI

TXG59826.1 hypothetical protein EZV62_014399 [Acer yangbiense]5.8e-0751.72Show/hide
Query:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI
        K HFVVYVGE + R++VP+ CLS   FQ+LL K EDE   ++E  + +PC   VF SI
Subjt:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI

TrEMBL top hitse value%identityAlignment
A0A2P5F9G2 Small auxin-up RNA2.1e-0742.22Show/hide
Query:  FNSFLVKSFEMKLIEKLQELLRKPKS-----KKDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI
        F   + K    K   K  +  R PK       +  F +YVGEE KRYVVPL  LS+ IFQ+LLN+F +EI +  +  + +PCS  +FESI
Subjt:  FNSFLVKSFEMKLIEKLQELLRKPKS-----KKDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI

A0A5C7HLR0 Uncharacterized protein7.3e-0840.54Show/hide
Query:  KLIEKLQELLRKPKSKKDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI
        K+  K +   RK ++ K HFVVYVGEE++R+VVPL  L +  FQ LL+K  +E     + +++LPC    F+++
Subjt:  KLIEKLQELLRKPKSKKDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI

A0A5C7HU54 Uncharacterized protein2.8e-0751.72Show/hide
Query:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI
        K HFVVYVGE + R++VP+ CLS   FQ+LL K EDE   ++E  + +PC   VF SI
Subjt:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI

A0A6A4MZX4 Putative small auxin-up RNA3.6e-0751.72Show/hide
Query:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI
        K HFVVYVGE + RY+VP+  LS   FQ+LL+K E+E     E  +I+PC   VFES+
Subjt:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI

A0A6A5M2S9 Uncharacterized protein3.6e-0750Show/hide
Query:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI
        K HFVVYVGE + RY+VP+  LS   FQ+LL++ E+E     E  + +PC  YVFES+
Subjt:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI

SwissProt top hitse value%identityAlignment
O65695 Auxin-responsive protein SAUR506.0e-0741.38Show/hide
Query:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI
        K HF VYVGE + RY+VP+  L+   FQSLL + E+E     +  + +PC   VF+++
Subjt:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI

P0DKL1 Auxin-responsive protein SAUR509.2e-0845.61Show/hide
Query:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFES
        K HFVVYVGE + RY+VP+ CL    FQ LL + E+E     +  +I+PC    F S
Subjt:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFES

P32295 Indole-3-acetic acid-induced protein ARG71.5e-0538.98Show/hide
Query:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEI-HSQKEGKMILPCSTYVFESI
        K +  VYVGE  KR+V+P+  L+  +FQ LL++ E+E  +    G + +PCS  +F+ I
Subjt:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEI-HSQKEGKMILPCSTYVFESI

P33082 Auxin-induced protein X153.3e-0534.62Show/hide
Query:  FEMKLIEKLQELLRKPKSKKDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEI-HSQKEGKMILPCSTYVFESI
        F +  I K    +  PK    +  VYVGE+ KR+V+P+  ++   FQ LL + E+E  +    G + +PCS  VF+ I
Subjt:  FEMKLIEKLQELLRKPKSKKDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEI-HSQKEGKMILPCSTYVFESI

P33083 Auxin-induced protein 6B1.9e-0538.33Show/hide
Query:  KKDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEI-HSQKEGKMILPCSTYVFESI
        +K +  VYVGE+ +R+V+P+  L+   FQ LL++ E+E  +    G + +PCS  VF+ I
Subjt:  KKDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEI-HSQKEGKMILPCSTYVFESI

Arabidopsis top hitse value%identityAlignment
AT1G75580.1 SAUR-like auxin-responsive protein family5.6e-0844.83Show/hide
Query:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI
        K HFVVYVGE + RYVVP+  L+   FQ LL + E+E     +  + +PC   VF S+
Subjt:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI

AT2G21220.1 SAUR-like auxin-responsive protein family9.5e-0841.38Show/hide
Query:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI
        K HF VYVGE++ RY+VP+  L+   F+SLL + E+E     +  + +PC   VF S+
Subjt:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI

AT4G34760.1 SAUR-like auxin-responsive protein family4.3e-0841.38Show/hide
Query:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI
        K HF VYVGE + RY+VP+  L+   FQSLL + E+E     +  + +PC   VF+++
Subjt:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI

AT4G36110.1 SAUR-like auxin-responsive protein family5.6e-0844.83Show/hide
Query:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI
        K HF VYVG+ + RYVVP+  L    FQSLL   E+E   + E  + +PC   VF S+
Subjt:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI

AT5G66260.1 SAUR-like auxin-responsive protein family1.6e-0737.93Show/hide
Query:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI
        K HFVVYVG  + R+V+P+  L+  IFQ LL + E+E    ++  + +PC  + F ++
Subjt:  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCAATTCATTCCTTGTCAAATCTTTCGAGATGAAGCTTATAGAAAAGTTGCAAGAGCTGTTGAGAAAGCCAAAGTCAAAGAAAGATCACTTTGTAGTCTACGTGGGAGA
AGAACAAAAGCGATATGTCGTTCCACTGAAGTGTTTGTCGTCCATCATATTTCAGTCATTACTGAACAAATTTGAAGATGAAATTCATTCTCAAAAAGAGGGAAAGATGA
TATTGCCATGCTCCACTTATGTTTTCGAATCTATC
mRNA sequenceShow/hide mRNA sequence
TTCAATTCATTCCTTGTCAAATCTTTCGAGATGAAGCTTATAGAAAAGTTGCAAGAGCTGTTGAGAAAGCCAAAGTCAAAGAAAGATCACTTTGTAGTCTACGTGGGAGA
AGAACAAAAGCGATATGTCGTTCCACTGAAGTGTTTGTCGTCCATCATATTTCAGTCATTACTGAACAAATTTGAAGATGAAATTCATTCTCAAAAAGAGGGAAAGATGA
TATTGCCATGCTCCACTTATGTTTTCGAATCTATC
Protein sequenceShow/hide protein sequence
FNSFLVKSFEMKLIEKLQELLRKPKSKKDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI