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MS016373 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016373
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold227:63960..64106
RNA-Seq ExpressionMS016373
SyntenyMS016373
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062318.1 uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa]3.8e-1161.22Show/hide
Query:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG
        VC+P +EGGLG+R   SWN  + +K+LWL +T +GSLWVAWVEAY+L+G
Subjt:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG
TYK26658.1 uncharacterized protein E5676_scaffold313G003080 [Cucumis melo var. makuwa]3.8e-1161.22Show/hide
Query:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG
        VC+P +EGGLG+R   SWN  + +K+LWL +T +GSLWVAWVEAY+L+G
Subjt:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG
TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]1.1e-1059.18Show/hide
Query:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG
        VC+P +EGG G+R   SWN  + +K+LWL +T +GSLWVAWVEAY+L+G
Subjt:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG
XP_038889378.1 uncharacterized protein LOC120079297 [Benincasa hispida]1.7e-1169.39Show/hide
Query:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG
        VC+PL EG LGV+H+ASWN  A+MKLLWL + ++GSLWVAWVE YVL G
Subjt:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG
XP_038895844.1 uncharacterized protein LOC120084011 [Benincasa hispida]1.3e-1169.39Show/hide
Query:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG
        VC+ L+EGGLGV+H+ASWN  A+MKLLW  + ++GSLWVAWVEA VLRG
Subjt:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG
TrEMBL top hitse value%identityAlignment
A0A5A7SPE5 Reverse transcriptase domain-containing protein5.3e-1159.18Show/hide
Query:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG
        VC+P +EGG G+R   SWN  + +K+LWL +T +GSLWVAWVEAY+L+G
Subjt:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG
A0A5A7TWG5 Reverse transcriptase domain-containing protein9.1e-1160.42Show/hide
Query:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLR
        VC+P +EGGLG+R   SWN  + +K+LWL +T +GSLWVAWVEAY+L+
Subjt:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLR
A0A5A7V3Z0 Reverse transcriptase domain-containing protein1.8e-1161.22Show/hide
Query:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG
        VC+P +EGGLG+R   SWN  + +K+LWL +T +GSLWVAWVEAY+L+G
Subjt:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG
A0A5D3DT20 Reverse transcriptase domain-containing protein1.8e-1161.22Show/hide
Query:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG
        VC+P +EGGLG+R   SWN  + +K+LWL +T +GSLWVAWVEAY+L+G
Subjt:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG
A0A5D3DXE4 Reverse transcriptase domain-containing protein5.3e-1159.18Show/hide
Query:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG
        VC+P +EGG G+R   SWN  + +K+LWL +T +GSLWVAWVEAY+L+G
Subjt:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G25720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.9e-0846.94Show/hide
Query:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG
        VC+P  EGGLG+R  + WN T  +KL+W   +  GSLWV W   + L+G
Subjt:  VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGTGTATTCCTTTGCAAGAGGGTGGTTTGGGTGTGCGTCACTTGGCTTCTTGGAATTTTACCGCTATGATGAAGTTGCTCTGGCTTTTCATTACGCAAGCTGGCTCTCT
TTGGGTAGCTTGGGTAGAGGCTTATGTTCTTCGGGGG
mRNA sequenceShow/hide mRNA sequence
GTGTGTATTCCTTTGCAAGAGGGTGGTTTGGGTGTGCGTCACTTGGCTTCTTGGAATTTTACCGCTATGATGAAGTTGCTCTGGCTTTTCATTACGCAAGCTGGCTCTCT
TTGGGTAGCTTGGGTAGAGGCTTATGTTCTTCGGGGG
Protein sequenceShow/hide protein sequence
VCIPLQEGGLGVRHLASWNFTAMMKLLWLFITQAGSLWVAWVEAYVLRG