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MS016374 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016374
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold227:64733..64885
RNA-Seq ExpressionMS016374
SyntenyMS016374
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057642.1 reverse transcriptase [Cucumis melo var. makuwa]9.7e-1062.75Show/hide
Query:  GGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFC-ASLESHNDLFF
        GGNI KHSF AWLA++DRL TRDR   WDS VP SC+ C   +ES + LFF
Subjt:  GGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFC-ASLESHNDLFF
XP_008452126.1 PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]9.7e-1062.75Show/hide
Query:  GGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFC-ASLESHNDLFF
        GGNI KHSF AWLA++DRL TRDR   WDS VP SC+ C   +ES + LFF
Subjt:  GGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFC-ASLESHNDLFF
XP_022149381.1 uncharacterized protein LOC111017811 [Momordica charantia]1.4e-1177.78Show/hide
Query:  FGGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFCASLES
        F GNI KHSFIAWLAVRDRLAT DRL  WDS +P SCVFC S ES
Subjt:  FGGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFCASLES
XP_022157473.1 uncharacterized protein LOC111024165 [Momordica charantia]1.9e-1374.51Show/hide
Query:  FGGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFCASLESHNDLFF
        FGGNI KHSFIAWLA+RDRLATRDRLC WD  V  SCVFC   ES ++LFF
Subjt:  FGGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFCASLESHNDLFF
XP_022158861.1 uncharacterized protein LOC111025324 [Momordica charantia]4.7e-1268Show/hide
Query:  FGGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFCASLESHNDLF
        FGGNI KHSFI+WLA+RDRL TR+RL  W++ VP +CVFCA LES + LF
Subjt:  FGGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFCASLESHNDLF
TrEMBL top hitse value%identityAlignment
A0A5A7UP65 Reverse transcriptase4.7e-1062.75Show/hide
Query:  GGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFC-ASLESHNDLFF
        GGNI KHSF AWLA++DRL TRDR   WDS VP SC+ C   +ES + LFF
Subjt:  GGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFC-ASLESHNDLFF
A0A5D3D7P6 Reverse transcriptase4.7e-1062.75Show/hide
Query:  GGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFC-ASLESHNDLFF
        GGNI KHSF AWLA++DRL TRDR   WDS VP SC+ C   +ES + LFF
Subjt:  GGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFC-ASLESHNDLFF
A0A6J1D875 uncharacterized protein LOC1110178116.6e-1277.78Show/hide
Query:  FGGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFCASLES
        F GNI KHSFIAWLAVRDRLAT DRL  WDS +P SCVFC S ES
Subjt:  FGGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFCASLES
A0A6J1DTG0 uncharacterized protein LOC1110241659.2e-1474.51Show/hide
Query:  FGGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFCASLESHNDLFF
        FGGNI KHSFIAWLA+RDRLATRDRLC WD  V  SCVFC   ES ++LFF
Subjt:  FGGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFCASLESHNDLFF
A0A6J1E271 uncharacterized protein LOC1110253242.3e-1268Show/hide
Query:  FGGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFCASLESHNDLF
        FGGNI KHSFI+WLA+RDRL TR+RL  W++ VP +CVFCA LES + LF
Subjt:  FGGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFCASLESHNDLF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein9.7e-0846.15Show/hide
Query:  FGGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFCASL-ESHNDLFF
        F G I KH+FIAW+ +R RL T+DR+  W    P  C+FC +  E+   LFF
Subjt:  FGGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFCASL-ESHNDLFF
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.8e-0643.48Show/hide
Query:  KHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFCASL-ESHNDLFF
        K+S +AW+A+++RL T DR+  W++   +SCV C  L E+ + LFF
Subjt:  KHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFCASL-ESHNDLFF
AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.6e-0846.15Show/hide
Query:  FGGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFCASL-ESHNDLFF
        F G I KH+FI+W+ +R RL TRD+L  W   VP+ C+ C +  E+   LFF
Subjt:  FGGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFCASL-ESHNDLFF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTGGTGGGAACATTCTGAAGCATTCTTTCATTGCTTGGTTGGCGGTGCGTGATCGGCTTGCTACAAGGGATCGCTTATGTCATTGGGACTCTTTCGTTCCTACTTCTTG
TGTGTTTTGTGCTAGCTTGGAGTCCCATAATGATCTATTCTTT
mRNA sequenceShow/hide mRNA sequence
TTTGGTGGGAACATTCTGAAGCATTCTTTCATTGCTTGGTTGGCGGTGCGTGATCGGCTTGCTACAAGGGATCGCTTATGTCATTGGGACTCTTTCGTTCCTACTTCTTG
TGTGTTTTGTGCTAGCTTGGAGTCCCATAATGATCTATTCTTT
Protein sequenceShow/hide protein sequence
FGGNILKHSFIAWLAVRDRLATRDRLCHWDSFVPTSCVFCASLESHNDLFF