; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS016378 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016378
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold227:90130..90312
RNA-Seq ExpressionMS016378
SyntenyMS016378
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026091.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.6e-0445.9Show/hide
Query:  DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP
        ++RMT++++ IN LM+A+++++ +IASL N IE +DAAES+    VK+ +K K IMQ+++P
Subjt:  DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP

KAA0032104.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.3e-0447.54Show/hide
Query:  DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP
        ++RMT++++ IN LM A+K+K+ +IASL N IE +D AES+    VK+  K K IMQ++ P
Subjt:  DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP

KAA0039052.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.3e-0447.54Show/hide
Query:  DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP
        D RMT++++ IN LM+A+++++ +IASL N IE +DAAES+ T    +  K KTIMQ++ P
Subjt:  DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP

KAA0054002.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-0445.9Show/hide
Query:  DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP
        ++RMT++++ IN LM+A++++N +IASL N IE +DAAES+ T   K+  K K +MQ++ P
Subjt:  DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP

TYJ99754.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-0449.18Show/hide
Query:  DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP
        D RMT++++ IN LM+A+++++ +IASL N IE +DAAES+ T   K+  K KTIMQ++ P
Subjt:  DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP

TrEMBL top hitse value%identityAlignment
A0A5A7SLN5 Ty3-gypsy retrotransposon protein1.6e-0447.54Show/hide
Query:  DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP
        ++RMT++++ IN LM A+K+K+ +IASL N IE +D AES+    VK+  K K IMQ++ P
Subjt:  DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP

A0A5A7T6D4 Ty3-gypsy retrotransposon protein2.1e-0447.54Show/hide
Query:  DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP
        D RMT++++ IN LM+A+++++ +IASL N IE +DAAES+ T    +  K KTIMQ++ P
Subjt:  DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP

A0A5D3B8Y1 Ty3-gypsy retrotransposon protein2.7e-0445.9Show/hide
Query:  DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP
        ++RMT++++ IN LM+A+++++ +IASL N IE +DAAES+    VK+ +K K IMQ+++P
Subjt:  DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP

A0A5D3BL51 Ty3-gypsy retrotransposon protein5.5e-0549.18Show/hide
Query:  DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP
        D RMT++++ IN LM+A+++++ +IASL N IE +DAAES+ T   K+  K KTIMQ++ P
Subjt:  DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP

A0A5D3DAS0 Ty3-gypsy retrotransposon protein9.3e-0545.9Show/hide
Query:  DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP
        ++RMT++++ IN LM+A++++N +IASL N IE +DAAES+ T   K+  K K +MQ++ P
Subjt:  DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATGAAAGAATGACAAAAATAAAGAGGATAATCAACACCTTGATGGAGGCAATAAAAAAAAAAAATTCTCAAATTGCCTCTTTAAACAACAGGATTGAGAGACAAGATGC
TGCTGAATCAACCCAGACCTTGGTTGTCAAAGATAATAGTAAAGAGAAGACCATTATGCAAAAAAATCACCCA
mRNA sequenceShow/hide mRNA sequence
GATGAAAGAATGACAAAAATAAAGAGGATAATCAACACCTTGATGGAGGCAATAAAAAAAAAAAATTCTCAAATTGCCTCTTTAAACAACAGGATTGAGAGACAAGATGC
TGCTGAATCAACCCAGACCTTGGTTGTCAAAGATAATAGTAAAGAGAAGACCATTATGCAAAAAAATCACCCA
Protein sequenceShow/hide protein sequence
DERMTKIKRIINTLMEAIKKKNSQIASLNNRIERQDAAESTQTLVVKDNSKEKTIMQKNHP