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MS016385 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016385
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold227:304587..304838
RNA-Seq ExpressionMS016385
SyntenyMS016385
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]7.7e-0459.18Show/hide
Query:  LTPLLAEIRGILEGLKFAASSSCSRLEVESDSFTTIRLIRQKLHTIGDE
        L PL AEIRGILE LK AAS S +RL VESD    IRL++  L ++G+E
Subjt:  LTPLLAEIRGILEGLKFAASSSCSRLEVESDSFTTIRLIRQKLHTIGDE
XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.1e-2167.86Show/hide
Query:  LTPLLAEIRGILEGLKFAASSSCSRLEVESDSFTTIRLIRQKLHTIGDEQNWLVEIQALTQGFDFVSFTHCSRFCNLSAHSLAK
        L+PLLAEIR ILEGLKFAA+S+ + LEVESDS   I+LIR ++HT GDEQNW++EIQALT  F F+SF+H SR CN +AH LAK
Subjt:  LTPLLAEIRGILEGLKFAASSSCSRLEVESDSFTTIRLIRQKLHTIGDEQNWLVEIQALTQGFDFVSFTHCSRFCNLSAHSLAK
XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]7.7e-0436.14Show/hide
Query:  TPLLAEIRGILEGLKFAASSSCSRLEVESDSFTTIRLIRQKLHTIGDEQNWLVEIQALTQGFDFVSFTHCSRFCNLSAHSLAK
        TPLLA+I  I EGL  A      R+ VE+DS   + LI  K    G+  +W+ +I+A  + F  + F H  R  N  A+ L +
Subjt:  TPLLAEIRGILEGLKFAASSSCSRLEVESDSFTTIRLIRQKLHTIGDEQNWLVEIQALTQGFDFVSFTHCSRFCNLSAHSLAK
TrEMBL top hitse value%identityAlignment
A0A0Q3KYN3 RNase H domain-containing protein4.9e-0436.71Show/hide
Query:  AEIRGILEGLKFAASSSCSRLEVESDSFTTIRLIRQKLHTIGDEQNWLVEIQALTQGFDFVSFTHCSRFCNLSAHSLAK
        AE   + +GL  A    C+RLE+ SD    ++ +     +IG       E   L +GF FVS  HC R  NL AH+LA+
Subjt:  AEIRGILEGLKFAASSSCSRLEVESDSFTTIRLIRQKLHTIGDEQNWLVEIQALTQGFDFVSFTHCSRFCNLSAHSLAK
A0A6J1BQ49 uncharacterized protein LOC1110047863.7e-0459.18Show/hide
Query:  LTPLLAEIRGILEGLKFAASSSCSRLEVESDSFTTIRLIRQKLHTIGDE
        L PL AEIRGILE LK AAS S +RL VESD    IRL++  L ++G+E
Subjt:  LTPLLAEIRGILEGLKFAASSSCSRLEVESDSFTTIRLIRQKLHTIGDE
A0A6J1DX30 uncharacterized protein LOC1110248745.2e-2267.86Show/hide
Query:  LTPLLAEIRGILEGLKFAASSSCSRLEVESDSFTTIRLIRQKLHTIGDEQNWLVEIQALTQGFDFVSFTHCSRFCNLSAHSLAK
        L+PLLAEIR ILEGLKFAA+S+ + LEVESDS   I+LIR ++HT GDEQNW++EIQALT  F F+SF+H SR CN +AH LAK
Subjt:  LTPLLAEIRGILEGLKFAASSSCSRLEVESDSFTTIRLIRQKLHTIGDEQNWLVEIQALTQGFDFVSFTHCSRFCNLSAHSLAK
A0A6J1DZK3 uncharacterized protein LOC1110249683.7e-0436.14Show/hide
Query:  TPLLAEIRGILEGLKFAASSSCSRLEVESDSFTTIRLIRQKLHTIGDEQNWLVEIQALTQGFDFVSFTHCSRFCNLSAHSLAK
        TPLLA+I  I EGL  A      R+ VE+DS   + LI  K    G+  +W+ +I+A  + F  + F H  R  N  A+ L +
Subjt:  TPLLAEIRGILEGLKFAASSSCSRLEVESDSFTTIRLIRQKLHTIGDEQNWLVEIQALTQGFDFVSFTHCSRFCNLSAHSLAK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGACACCGTTACTTGCTGAAATTAGAGGCATCTTGGAGGGTTTGAAATTTGCAGCCTCTTCATCTTGCTCTCGACTGGAGGTTGAGTCAGATTCATTCACGACGATTCG
GTTAATCCGGCAGAAGCTTCACACCATTGGAGATGAACAAAATTGGCTGGTGGAGATTCAAGCCCTAACTCAAGGATTCGATTTTGTTTCTTTTACCCACTGCTCACGGT
TTTGCAATCTCTCTGCCCATAGTTTAGCAAAA
mRNA sequenceShow/hide mRNA sequence
TTGACACCGTTACTTGCTGAAATTAGAGGCATCTTGGAGGGTTTGAAATTTGCAGCCTCTTCATCTTGCTCTCGACTGGAGGTTGAGTCAGATTCATTCACGACGATTCG
GTTAATCCGGCAGAAGCTTCACACCATTGGAGATGAACAAAATTGGCTGGTGGAGATTCAAGCCCTAACTCAAGGATTCGATTTTGTTTCTTTTACCCACTGCTCACGGT
TTTGCAATCTCTCTGCCCATAGTTTAGCAAAA
Protein sequenceShow/hide protein sequence
LTPLLAEIRGILEGLKFAASSSCSRLEVESDSFTTIRLIRQKLHTIGDEQNWLVEIQALTQGFDFVSFTHCSRFCNLSAHSLAK