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MS016386 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016386
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold227:330559..330768
RNA-Seq ExpressionMS016386
SyntenyMS016386
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR032867 - DYW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057970.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.1e-2278.57Show/hide
Query:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH
        LDN+IKKLK NGY+  TG ++AL+D+E+EEKEHS+MYHSEKL LAFGLLNSPLDCTLRIVK LRICLD H
Subjt:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH

XP_004138309.2 pentatricopeptide repeat-containing protein At4g21065 [Cucumis sativus]3.6e-2381.43Show/hide
Query:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH
        LDN+IKKLK NGY+  TG ++AL+DIE+EEKEHSVMYHSEKL LAFGLLNSPLDCTLRIVK LRICLD H
Subjt:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH

XP_016901378.1 PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis melo]1.1e-2278.57Show/hide
Query:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH
        LDN+IKKLK NGY+  TG ++AL+D+E+EEKEHS+MYHSEKL LAFGLLNSPLDCTLRIVK LRICLD H
Subjt:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH

XP_022134759.1 pentatricopeptide repeat-containing protein At4g21065-like [Momordica charantia]1.2e-2385.71Show/hide
Query:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH
        LDNVI+KLKANGYIT TG  +ALFDIEEEEKEH VMYHSEKL LAFGLLNSPLDC LRIVK LRICLD H
Subjt:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH

XP_023529316.1 pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp. pepo]1.8e-2280Show/hide
Query:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH
        LDNV+KKLK NGY+  TG +++LFDIE+EEKEHSVMYHSEKL LAFGLLNSPLDCTLRIVK LRIC D H
Subjt:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH

TrEMBL top hitse value%identityAlignment
A0A0A0LUK8 DYW_deaminase domain-containing protein1.8e-2381.43Show/hide
Query:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH
        LDN+IKKLK NGY+  TG ++AL+DIE+EEKEHSVMYHSEKL LAFGLLNSPLDCTLRIVK LRICLD H
Subjt:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH

A0A1S4DZH3 pentatricopeptide repeat-containing protein At4g21065-like5.1e-2378.57Show/hide
Query:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH
        LDN+IKKLK NGY+  TG ++AL+D+E+EEKEHS+MYHSEKL LAFGLLNSPLDCTLRIVK LRICLD H
Subjt:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH

A0A5A7US40 Pentatricopeptide repeat-containing protein5.1e-2378.57Show/hide
Query:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH
        LDN+IKKLK NGY+  TG ++AL+D+E+EEKEHS+MYHSEKL LAFGLLNSPLDCTLRIVK LRICLD H
Subjt:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH

A0A6J1BZP4 pentatricopeptide repeat-containing protein At4g21065-like6.0e-2485.71Show/hide
Query:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH
        LDNVI+KLKANGYIT TG  +ALFDIEEEEKEH VMYHSEKL LAFGLLNSPLDC LRIVK LRICLD H
Subjt:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH

A0A6J1KY52 pentatricopeptide repeat-containing protein At4g21065-like8.7e-2380Show/hide
Query:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH
        LDNV+KKLK NGY+  TG +++LFDIE+EEKEHSVMYHSEKL LAFGLLNSPLDCTLRIVK LRIC D H
Subjt:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH

SwissProt top hitse value%identityAlignment
O23337 Pentatricopeptide repeat-containing protein At4g148201.3e-1048.68Show/hide
Query:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLD-----C-TLRIVKKLRICLDYH
        LD V+ KLK  GY+   G    L D+EEEEK+  V++HSEKL L FGL+N   +     C  +RIVK LR+C D H
Subjt:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLD-----C-TLRIVKKLRICLDYH

P0C7R1 Pentatricopeptide repeat-containing protein DWY1, chloroplastic1.3e-1044.29Show/hide
Query:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH
        L ++ K+++  GY+  T  +  L DI+EE KE ++M+HSE+L +AFG++N+P   T+R++K LRIC D H
Subjt:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH

Q0WSH6 Pentatricopeptide repeat-containing protein At4g148501.3e-1051.56Show/hide
Query:  KLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH
        +++A GY     ++++L+D+EEEEK   V +HSEKL LAFGLL+ PL   +RI K LRIC D H
Subjt:  KLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH

Q8LK93 Pentatricopeptide repeat-containing protein At2g02980, chloroplastic3.0e-1245.71Show/hide
Query:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH
        LD ++K+LK +GY+  T + +   ++ ++EKE ++ YHSEKL + FGLLN+P   T+R+VK LR+C D H
Subjt:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH

Q9SMZ2 Pentatricopeptide repeat-containing protein At4g331703.0e-1247.06Show/hide
Query:  NVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH
        ++I+ +K  GY+  T  +  L D+EEEEKE ++ YHSEKL +AFGLL++P    +R++K LR+C D H
Subjt:  NVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH

Arabidopsis top hitse value%identityAlignment
AT1G47580.1 Pentatricopeptide repeat (PPR) superfamily protein8.9e-1244.29Show/hide
Query:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH
        L ++ K+++  GY+  T  +  L DI+EE KE ++M+HSE+L +AFG++N+P   T+R++K LRIC D H
Subjt:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH

AT2G02980.1 Pentatricopeptide repeat (PPR) superfamily protein2.1e-1345.71Show/hide
Query:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH
        LD ++K+LK +GY+  T + +   ++ ++EKE ++ YHSEKL + FGLLN+P   T+R+VK LR+C D H
Subjt:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH

AT4G14820.1 Pentatricopeptide repeat (PPR) superfamily protein8.9e-1248.68Show/hide
Query:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLD-----C-TLRIVKKLRICLDYH
        LD V+ KLK  GY+   G    L D+EEEEK+  V++HSEKL L FGL+N   +     C  +RIVK LR+C D H
Subjt:  LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLD-----C-TLRIVKKLRICLDYH

AT4G14850.1 Pentatricopeptide repeat (PPR) superfamily protein8.9e-1251.56Show/hide
Query:  KLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH
        +++A GY     ++++L+D+EEEEK   V +HSEKL LAFGLL+ PL   +RI K LRIC D H
Subjt:  KLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH

AT4G33170.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.1e-1347.06Show/hide
Query:  NVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH
        ++I+ +K  GY+  T  +  L D+EEEEKE ++ YHSEKL +AFGLL++P    +R++K LR+C D H
Subjt:  NVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGGACAATGTGATCAAGAAATTGAAAGCAAATGGTTACATTACGTATACGGGCATCGAAATAGCTTTGTTTGATATTGAGGAAGAAGAGAAAGAACATTCTGTGATGTA
CCATAGTGAGAAACTTGTTTTAGCTTTTGGTCTCTTAAACTCTCCTTTAGATTGCACCCTAAGGATAGTGAAAAAGCTGAGAATTTGCTTGGACTACCAT
mRNA sequenceShow/hide mRNA sequence
TTGGACAATGTGATCAAGAAATTGAAAGCAAATGGTTACATTACGTATACGGGCATCGAAATAGCTTTGTTTGATATTGAGGAAGAAGAGAAAGAACATTCTGTGATGTA
CCATAGTGAGAAACTTGTTTTAGCTTTTGGTCTCTTAAACTCTCCTTTAGATTGCACCCTAAGGATAGTGAAAAAGCTGAGAATTTGCTTGGACTACCAT
Protein sequenceShow/hide protein sequence
LDNVIKKLKANGYITYTGIEIALFDIEEEEKEHSVMYHSEKLVLAFGLLNSPLDCTLRIVKKLRICLDYH