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MS016424 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016424
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein CLP1 homolog
Genome locationscaffold1486:103617..103787
RNA-Seq ExpressionMS016424
SyntenyMS016424
Gene Ontology termsGO:0006378 - mRNA polyadenylation (biological process)
GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005849 - mRNA cleavage factor complex (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0051731 - polynucleotide 5'-hydroxyl-kinase activity (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR032324 - Clp1, N-terminal beta-sandwich domain
IPR038239 - Clp1, N-terminal beta-sandwich domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008459297.1 PREDICTED: protein CLP1 homolog [Cucumis melo]1.6e-1685.96Show/hide
Query:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
        MAYG PAT AGS STSSIRQVKLDRESELRIEVGSDSPL L+L SGN+EIFGTEL P
Subjt:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
XP_022134389.1 protein CLP1 homolog [Momordica charantia]1.2e-1685.96Show/hide
Query:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
        MAYG P TAAGSGSTSSIRQVKLDRESELRIEVG+DSPL L+L SGN+EIFGTEL P
Subjt:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
XP_022921936.1 protein CLP1 homolog [Cucurbita moschata]4.6e-1682.46Show/hide
Query:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
        MAYG PAT AGS STSS+RQVKLDRESELRIEVG+DSPL L+L SGN+EIFGTEL P
Subjt:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
XP_022990827.1 protein CLP1 homolog [Cucurbita maxima]4.6e-1682.46Show/hide
Query:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
        MAYG PAT AGS STSS+RQVKLDRESELRIEVG+DSPL L+L SGN+EIFGTEL P
Subjt:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
XP_023533688.1 protein CLP1 homolog [Cucurbita pepo subsp. pepo]4.6e-1682.46Show/hide
Query:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
        MAYG PAT AGS STSS+RQVKLDRESELRIEVG+DSPL L+L SGN+EIFGTEL P
Subjt:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
TrEMBL top hitse value%identityAlignment
A0A1S3C9X9 Protein CLP1 homolog7.6e-1785.96Show/hide
Query:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
        MAYG PAT AGS STSSIRQVKLDRESELRIEVGSDSPL L+L SGN+EIFGTEL P
Subjt:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
A0A5A7TDF1 Protein CLP1 homolog7.6e-1785.96Show/hide
Query:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
        MAYG PAT AGS STSSIRQVKLDRESELRIEVGSDSPL L+L SGN+EIFGTEL P
Subjt:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
A0A6J1BYM6 Protein CLP1 homolog5.8e-1785.96Show/hide
Query:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
        MAYG P TAAGSGSTSSIRQVKLDRESELRIEVG+DSPL L+L SGN+EIFGTEL P
Subjt:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
A0A6J1E2R2 Protein CLP1 homolog2.2e-1682.46Show/hide
Query:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
        MAYG PAT AGS STSS+RQVKLDRESELRIEVG+DSPL L+L SGN+EIFGTEL P
Subjt:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
A0A6J1JJY4 Protein CLP1 homolog2.2e-1682.46Show/hide
Query:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
        MAYG PAT AGS STSS+RQVKLDRESELRIEVG+DSPL L+L SGN+EIFGTEL P
Subjt:  MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
SwissProt top hitse value%identityAlignment
Q66JK4 Polyribonucleotide 5'-hydroxyl-kinase Clp19.3e-0442.86Show/hide
Query:  TAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELS
        +A  S  T    + +L+RE+ELR+EV    P+ ++L SG +E+FGTEL+
Subjt:  TAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELS
Q6NS21 Polyribonucleotide 5'-hydroxyl-kinase Clp17.1e-0441.82Show/hide
Query:  AYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELS
        A G  A  +   ST    + +L+RE+ELR+EV    P+ ++L SG +E+FGTEL+
Subjt:  AYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELS
Q9FLE2 Protein CLP1 homolog 53.8e-0560.53Show/hide
Query:  IRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTEL
        IR+VKL+++SELRIE+   SPL L+L  G +EIFG EL
Subjt:  IRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTEL
Q9SR06 Protein CLP1 homolog3.1e-0750Show/hide
Query:  MAYG-----VPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
        MAYG      PA +     +++++QVKL+RESELRIEV S+ PL L++ +G +EIFG+EL P
Subjt:  MAYG-----VPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
Arabidopsis top hitse value%identityAlignment
AT3G04680.1 CLP-similar protein 32.2e-0850Show/hide
Query:  MAYG-----VPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
        MAYG      PA +     +++++QVKL+RESELRIEV S+ PL L++ +G +EIFG+EL P
Subjt:  MAYG-----VPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
AT3G04680.2 CLP-similar protein 32.2e-0850Show/hide
Query:  MAYG-----VPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
        MAYG      PA +     +++++QVKL+RESELRIEV S+ PL L++ +G +EIFG+EL P
Subjt:  MAYG-----VPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP
AT5G39930.1 CLP1-similar protein 52.7e-0660.53Show/hide
Query:  IRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTEL
        IR+VKL+++SELRIE+   SPL L+L  G +EIFG EL
Subjt:  IRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTEL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTATGGCGTTCCAGCCACAGCGGCTGGCTCGGGATCAACTTCTTCGATCAGGCAGGTCAAGCTGGATAGAGAGAGCGAGCTCAGGATTGAAGTTGGAAGCGACTC
ACCTCTCTATTTACAGCTATTCTCCGGTAATTCTGAGATCTTCGGCACGGAGCTTTCTCCT
mRNA sequenceShow/hide mRNA sequence
ATGGCGTATGGCGTTCCAGCCACAGCGGCTGGCTCGGGATCAACTTCTTCGATCAGGCAGGTCAAGCTGGATAGAGAGAGCGAGCTCAGGATTGAAGTTGGAAGCGACTC
ACCTCTCTATTTACAGCTATTCTCCGGTAATTCTGAGATCTTCGGCACGGAGCTTTCTCCT
Protein sequenceShow/hide protein sequence
MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP