; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS016428 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016428
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionnuclear transport factor 2
Genome locationscaffold1486:132950..133927
RNA-Seq ExpressionMS016428
SyntenyMS016428
Gene Ontology termsGO:0006913 - nucleocytoplasmic transport (biological process)
GO:0044613 - nuclear pore central transport channel (cellular component)
InterPro domainsIPR002075 - Nuclear transport factor 2
IPR018222 - Nuclear transport factor 2, eukaryote
IPR032710 - NTF2-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584071.1 Nuclear transport factor 2B, partial [Cucurbita argyrosperma subsp. sororia]9.2e-5485.48Show/hide
Query:  MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS
        MEEE+++VG+AFVEHYYQLFDNER S+S+LYQP+SMLTFEGQ+ILGVDDISSRLQQLPFERCRHVVST+DTQPSA  GS+LIFVSGSLELP EEH LRFS
Subjt:  MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS

Query:  QMFHLVPTSQGSLFVQNDIFRLNY
        QMFHLVPT+QG+L VQNDIFRLNY
Subjt:  QMFHLVPTSQGSLFVQNDIFRLNY

XP_022139939.1 nuclear transport factor 2 [Momordica charantia]8.3e-63100Show/hide
Query:  MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS
        MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS
Subjt:  MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS

Query:  QMFHLVPTSQGSLFVQNDIFRLNYG
        QMFHLVPTSQGSLFVQNDIFRLNYG
Subjt:  QMFHLVPTSQGSLFVQNDIFRLNYG

XP_022933198.1 nuclear transport factor 2B [Cucurbita moschata]1.9e-5485.6Show/hide
Query:  MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS
        MEEE+++VG+AFVEHYYQLFDNER S+S+LYQP+SMLTFEGQ+ILGVDDISSRLQQLPFERCRHVVST+DTQPSA  GS+LIFVSGSLELP EEH LRFS
Subjt:  MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS

Query:  QMFHLVPTSQGSLFVQNDIFRLNYG
        QMFHLVPT+QG+L VQNDIFRLNYG
Subjt:  QMFHLVPTSQGSLFVQNDIFRLNYG

XP_023519037.1 nuclear transport factor 2B [Cucurbita pepo subsp. pepo]2.4e-5485.6Show/hide
Query:  MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS
        MEEE+++VG+AFVEHYYQLFDNER S+S+LYQP+SMLTFEGQ+ILGVDDISSRLQQLPFERCRHVVST+DTQPSA  GS+LIFVSGSLELP EEH LRFS
Subjt:  MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS

Query:  QMFHLVPTSQGSLFVQNDIFRLNYG
        QMFHLVPT+QG+L VQNDIFRLNYG
Subjt:  QMFHLVPTSQGSLFVQNDIFRLNYG

XP_038895004.1 nuclear transport factor 2B [Benincasa hispida]2.1e-5383.2Show/hide
Query:  MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS
        MEEE++++G+AFVEHYYQLFDNERAS+SSLYQP+SMLTFEGQ+ILGVDDISS+LQQLPFER RH+VST+DTQPS+  GS LIFVSGSLELP EEHQLRFS
Subjt:  MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS

Query:  QMFHLVPTSQGSLFVQNDIFRLNYG
        QMFHLVP+ QG+LFVQN+IFRLNYG
Subjt:  QMFHLVPTSQGSLFVQNDIFRLNYG

TrEMBL top hitse value%identityAlignment
A0A0A0LUU9 NTF2 domain-containing protein3.8e-5381.6Show/hide
Query:  MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS
        MEEE +++G+AFVEHYYQLFDNERAS+SSLYQP+SMLTFEGQ+ILGV DISS+LQQLPFERCRHVVST+DTQPS+  GS+LIFVSGS+E+P EEH LRFS
Subjt:  MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS

Query:  QMFHLVPTSQGSLFVQNDIFRLNYG
        QMFHLVP+ +G+LFVQNDIFRLNYG
Subjt:  QMFHLVPTSQGSLFVQNDIFRLNYG

A0A1S3B3B7 nuclear transport factor 21.2e-5179.03Show/hide
Query:  EEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFSQ
        EE+ +++G+AFVEHYY LFDNERAS+SSLYQP+SMLTFEGQ+ILGV+DIS++LQQLPFERCRHVVST+DTQPS+  GS+LIFVSGS+E+P EEH LR+SQ
Subjt:  EEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFSQ

Query:  MFHLVPTSQGSLFVQNDIFRLNYG
        MFHLVP+ QG+LFVQNDIFRLNYG
Subjt:  MFHLVPTSQGSLFVQNDIFRLNYG

A0A6J1CEC9 nuclear transport factor 24.0e-63100Show/hide
Query:  MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS
        MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS
Subjt:  MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS

Query:  QMFHLVPTSQGSLFVQNDIFRLNYG
        QMFHLVPTSQGSLFVQNDIFRLNYG
Subjt:  QMFHLVPTSQGSLFVQNDIFRLNYG

A0A6J1F427 nuclear transport factor 2B9.0e-5585.6Show/hide
Query:  MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS
        MEEE+++VG+AFVEHYYQLFDNER S+S+LYQP+SMLTFEGQ+ILGVDDISSRLQQLPFERCRHVVST+DTQPSA  GS+LIFVSGSLELP EEH LRFS
Subjt:  MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS

Query:  QMFHLVPTSQGSLFVQNDIFRLNYG
        QMFHLVPT+QG+L VQNDIFRLNYG
Subjt:  QMFHLVPTSQGSLFVQNDIFRLNYG

A0A6J1KQ62 nuclear transport factor 2B1.0e-5384Show/hide
Query:  MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS
        MEEE+++VG+AFVEHYYQLFDNER S+S+LYQP+SMLTFEGQ+ILGV DISSRLQQLPFERCRHVVST+DTQPSA  GS+LIFVSGSLELP EEH LRFS
Subjt:  MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS

Query:  QMFHLVPTSQGSLFVQNDIFRLNYG
        QMFHLVPT+QG+L +QNDIFRLNYG
Subjt:  QMFHLVPTSQGSLFVQNDIFRLNYG

SwissProt top hitse value%identityAlignment
Q10100 Nuclear transport factor 21.3e-2650Show/hide
Query:  FVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFSQMFHLVPTSQG
        F + YYQ FD++R+ +SSLY+ ESML+FEG ++ G   I  +L  LPF+R +H +STLD QP+  TGS+++ V+G L L  E+   R+SQ+FHLV  + G
Subjt:  FVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFSQMFHLVPTSQG

Query:  SLFVQNDIFRLNYG
        + +V ND+FRLNYG
Subjt:  SLFVQNDIFRLNYG

Q9C7F5 Nuclear transport factor 2B7.4e-3859.5Show/hide
Query:  ESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFSQMF
        + + V +AFVEHYY  FD  R  ++ LYQ  SMLTFEGQKI GV  I ++L  LPF++C+H +ST+D QPS     +L+FVSG+L+L GEEH L+FSQMF
Subjt:  ESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFSQMF

Query:  HLVPTSQGSLFVQNDIFRLNY
        HL+PT QGS +V NDIFRLNY
Subjt:  HLVPTSQGSLFVQNDIFRLNY

Q9FZK4 Nuclear transport factor 2A5.0e-3456.2Show/hide
Query:  ESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFSQMF
        + + V +AFVEHYY  FD  R  + SLYQ  SMLTFEGQKI G  +I ++L  LPF++C+H ++T+D QPS   G +L+FVSG+L+L GE+H L+FSQMF
Subjt:  ESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFSQMF

Query:  HLVPTSQGSLFVQNDIFRLNY
        HL+ ++QG+ +V NDIFRLNY
Subjt:  HLVPTSQGSLFVQNDIFRLNY

Q9P926 Nuclear transport factor 23.2e-2545.16Show/hide
Query:  MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS
        M  +   V   F   YY  FD++R+ + +LY+ ESMLTFE  ++ G  DI  +L  LPF++  H +STLD QP++A G +L+ V+G L +  E++  R+S
Subjt:  MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFS

Query:  QMFHLVPTSQGSLFVQNDIFRLNY
        Q+FHL+P   GS +V NDIFRLNY
Subjt:  QMFHLVPTSQGSLFVQNDIFRLNY

Q9XJ54 Nuclear transport factor 21.2e-3254.1Show/hide
Query:  ESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFSQMF
        +++ V +AFVEHYY+ FD  R ++ SLYQ  SMLTFEGQ+ LG   I+ +L  LPF +C H ++T+D QPS   G +L+FVSGSL    +EH L+FSQMF
Subjt:  ESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFSQMF

Query:  HLVPTSQGSLFVQNDIFRLNYG
         L+P   G+ +VQND+FRLNYG
Subjt:  HLVPTSQGSLFVQNDIFRLNYG

Arabidopsis top hitse value%identityAlignment
AT1G11570.1 NTF2-like1.8e-3160.19Show/hide
Query:  EMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSA---ATGSLLIFVSGSLELPGEEHQLRFSQM
        E V  AFV HYY LFDN+R+S+SSLY P S+LTFEGQ I GVD+IS++L+QLPF++C H++ST+D+QPS+     G +L+FVSGS++L GE+H LRFSQ+
Subjt:  EMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSA---ATGSLLIFVSGSLELPGEEHQLRFSQM

Query:  FHL
        + L
Subjt:  FHL

AT1G11570.2 NTF2-like1.3e-4263.41Show/hide
Query:  EMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSA---ATGSLLIFVSGSLELPGEEHQLRFSQM
        E V  AFV HYY LFDN+R+S+SSLY P S+LTFEGQ I GVD+IS++L+QLPF++C H++ST+D+QPS+     G +L+FVSGS++L GE+H LRFSQ 
Subjt:  EMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSA---ATGSLLIFVSGSLELPGEEHQLRFSQM

Query:  FHLVPTSQGSLFVQNDIFRLNYG
        FHL+P  QGS FVQN++FRLNYG
Subjt:  FHLVPTSQGSLFVQNDIFRLNYG

AT1G27310.1 nuclear transport factor 2A3.5e-3556.2Show/hide
Query:  ESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFSQMF
        + + V +AFVEHYY  FD  R  + SLYQ  SMLTFEGQKI G  +I ++L  LPF++C+H ++T+D QPS   G +L+FVSG+L+L GE+H L+FSQMF
Subjt:  ESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFSQMF

Query:  HLVPTSQGSLFVQNDIFRLNY
        HL+ ++QG+ +V NDIFRLNY
Subjt:  HLVPTSQGSLFVQNDIFRLNY

AT1G27970.1 nuclear transport factor 2B5.2e-3959.5Show/hide
Query:  ESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFSQMF
        + + V +AFVEHYY  FD  R  ++ LYQ  SMLTFEGQKI GV  I ++L  LPF++C+H +ST+D QPS     +L+FVSG+L+L GEEH L+FSQMF
Subjt:  ESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFSQMF

Query:  HLVPTSQGSLFVQNDIFRLNY
        HL+PT QGS +V NDIFRLNY
Subjt:  HLVPTSQGSLFVQNDIFRLNY

AT1G27970.2 nuclear transport factor 2B1.9e-3658.12Show/hide
Query:  ESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFSQMF
        + + V +AFVEHYY  FD  R  ++ LYQ  SMLTFEGQKI GV  I ++L  LPF++C+H +ST+D QPS     +L+FVSG+L+L GEEH L+FSQMF
Subjt:  ESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFSQMF

Query:  HLVPTSQGSLFVQNDIF
        HL+PT QGS +V NDIF
Subjt:  HLVPTSQGSLFVQNDIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGAGAGTGAGATGGTGGGGAGGGCATTTGTGGAACATTATTACCAATTGTTCGACAACGAAAGAGCCTCTGTTTCGTCTCTGTACCAACCAGAGTCGATGCT
CACTTTCGAGGGGCAGAAAATCTTAGGCGTTGACGACATCTCCTCCAGGCTCCAGCAATTGCCCTTTGAACGCTGCCGACATGTCGTCAGCACTCTCGACACCCAGCCCT
CCGCCGCCACCGGCTCCCTCCTCATCTTCGTCAGCGGCAGCCTTGAGTTGCCCGGTGAAGAACACCAACTCAGATTCAGCCAGATGTTTCACTTGGTGCCGACGTCGCAG
GGGAGTCTTTTCGTTCAGAACGACATTTTTCGCCTCAATTACGGT
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAGAGAGTGAGATGGTGGGGAGGGCATTTGTGGAACATTATTACCAATTGTTCGACAACGAAAGAGCCTCTGTTTCGTCTCTGTACCAACCAGAGTCGATGCT
CACTTTCGAGGGGCAGAAAATCTTAGGCGTTGACGACATCTCCTCCAGGCTCCAGCAATTGCCCTTTGAACGCTGCCGACATGTCGTCAGCACTCTCGACACCCAGCCCT
CCGCCGCCACCGGCTCCCTCCTCATCTTCGTCAGCGGCAGCCTTGAGTTGCCCGGTGAAGAACACCAACTCAGATTCAGCCAGATGTTTCACTTGGTGCCGACGTCGCAG
GGGAGTCTTTTCGTTCAGAACGACATTTTTCGCCTCAATTACGGT
Protein sequenceShow/hide protein sequence
MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFERCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFSQMFHLVPTSQ
GSLFVQNDIFRLNYG