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MS016448 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016448
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description(3S,6E)-nerolidol synthase 1-like
Genome locationscaffold1486:285377..285616
RNA-Seq ExpressionMS016448
SyntenyMS016448
Gene Ontology termsGO:0016102 - diterpenoid biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005829 - cytosol (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0010333 - terpene synthase activity (molecular function)
InterPro domainsIPR005630 - Terpene synthase, metal-binding domain
IPR008949 - Isoprenoid synthase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056911.1 (3S,6E)-nerolidol synthase 1-like [Cucumis melo var. makuwa]3.5e-3080.77Show/hide
Query:  RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS
        RWWK+T+L KELNFARDQPIKWYMASLVCLTDS++SEQR++LAKSI+F+YLIDDLFDVFGTLDELTL TEAV+R +++
Subjt:  RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS

TYJ99412.1 (3S,6E)-nerolidol synthase 1-like [Cucumis melo var. makuwa]1.3e-2980.52Show/hide
Query:  WWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS
        WWK+T+L KELNFARDQPIKWYMASLVCLTDS++SEQR++LAKSI+F+YLIDDLFDVFGTLDELTL TEAV+R +++
Subjt:  WWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS

XP_008441685.1 PREDICTED: (3S,6E)-nerolidol synthase 1-like [Cucumis melo]1.3e-2980.52Show/hide
Query:  WWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS
        WWK+T+L KELNFARDQPIKWYMASLVCLTDS++SEQR++LAKSI+F+YLIDDLFDVFGTLDELTL TEAV+R +++
Subjt:  WWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS

XP_022140154.1 (3S,6E)-nerolidol synthase 1-like [Momordica charantia]3.4e-3392.31Show/hide
Query:  RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS
        +WWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGT DELTLLTEAVHR +++
Subjt:  RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS

XP_023520214.1 uncharacterized protein LOC111783517 [Cucurbita pepo subsp. pepo]1.2e-2775.95Show/hide
Query:  RWWKETDLAKELNFARDQPIKWYMASLVCL-TDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS
        +WWKETDLAK+LNF+RDQPIKWY+ASL+CL TDS++SEQR++LAKSISF+YLIDD+FDVFGTLDELT+ TEAV R +++
Subjt:  RWWKETDLAKELNFARDQPIKWYMASLVCL-TDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS

TrEMBL top hitse value%identityAlignment
A0A1S3B3I5 (3S,6E)-nerolidol synthase 1-like6.4e-3080.52Show/hide
Query:  WWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS
        WWK+T+L KELNFARDQPIKWYMASLVCLTDS++SEQR++LAKSI+F+YLIDDLFDVFGTLDELTL TEAV+R +++
Subjt:  WWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS

A0A5A7UTS7 (3S,6E)-nerolidol synthase 1-like1.7e-3080.77Show/hide
Query:  RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS
        RWWK+T+L KELNFARDQPIKWYMASLVCLTDS++SEQR++LAKSI+F+YLIDDLFDVFGTLDELTL TEAV+R +++
Subjt:  RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS

A0A5D3BI68 (3S,6E)-nerolidol synthase 1-like6.4e-3080.52Show/hide
Query:  WWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS
        WWK+T+L KELNFARDQPIKWYMASLVCLTDS++SEQR++LAKSI+F+YLIDDLFDVFGTLDELTL TEAV+R +++
Subjt:  WWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS

A0A6J1CEY1 (3S,6E)-nerolidol synthase 1-like1.6e-3392.31Show/hide
Query:  RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS
        +WWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGT DELTLLTEAVHR +++
Subjt:  RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS

A0A6J1KNB1 uncharacterized protein LOC1114957161.0e-2775.95Show/hide
Query:  RWWKETDLAKELNFARDQPIKWYMASLVCL-TDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS
        +WWKETDLAK+LNF+RDQPIKWY+ASL+CL TDS++S+QR++LAKSISFVYLIDD+FDVFGTLDELT+ TEAV R +++
Subjt:  RWWKETDLAKELNFARDQPIKWYMASLVCL-TDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS

SwissProt top hitse value%identityAlignment
B9RHX7 Probable terpene synthase 41.7e-1962.34Show/hide
Query:  WWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS
        WW    LA EL FARDQP KW M  LV +TD   S QR+ELAK +S VYLIDD+FD+ GT D+LTL TEAV+R EI+
Subjt:  WWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS

B9RXW4 Probable terpene synthase 131.2e-2053.16Show/hide
Query:  WWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEISCI
        WWK+  ++KEL F R+QP+KWY+ S+  L+D   S+QR++L K ISF+Y+IDD+FDV G+LDELTL TE V R ++  +
Subjt:  WWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEISCI

P0CV94 (3S,6E)-nerolidol synthase 16.4e-2770Show/hide
Query:  RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEISCI
        +WWKE  LAKEL FARDQP+KWY+ S+ CLTD   SE+RVEL K ISFVYLIDD+FDV+GTLD+L L TEAV+R EI+ I
Subjt:  RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEISCI

P0CV95 (3S,6E)-nerolidol synthase 2, chloroplastic/mitochondrial2.4e-2670Show/hide
Query:  RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEISCI
        +WWKE  LAKEL FARDQP KWY+ S+ CLTD   SE+RVEL K ISFVYLIDD+FDV+GTLD+L L TEAV+R EI+ I
Subjt:  RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEISCI

P0CV96 (3S,6E)-nerolidol synthase 1, chloroplastic7.8e-2567.5Show/hide
Query:  RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEISCI
        +WWKE  L KEL FARDQP+KWY  S+  LTD   SE+RVEL K ISFVYLIDD+FDV+GTLD+L L TEAV+R EI+ I
Subjt:  RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEISCI

Arabidopsis top hitse value%identityAlignment
AT1G61680.1 terpene synthase 148.0e-1750Show/hide
Query:  RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHR
        +WW E  L K++  AR QP+KW+  S+  L D   +EQR++L K IS VY+IDD+FDV+G L+ELT+ T  V R
Subjt:  RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHR

AT1G61680.2 terpene synthase 148.0e-1750Show/hide
Query:  RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHR
        +WW E  L K++  AR QP+KW+  S+  L D   +EQR++L K IS VY+IDD+FDV+G L+ELT+ T  V R
Subjt:  RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHR

AT3G14540.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein1.6e-0935.06Show/hide
Query:  RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEI
        +WWK+ DLA +L + RD+ ++ ++  L    +  +S  R+ +AK+I  + + DD +D   T+ E T+LTE   RL I
Subjt:  RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEI

AT4G16740.1 terpene synthase 032.5e-1035.06Show/hide
Query:  WWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS
        WW +T L K L+F RD+  + Y +S+  + +  F+  R  L K    +  IDD++D++GTL+EL L T  V + +++
Subjt:  WWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS

AT4G16740.2 terpene synthase 032.5e-1035.06Show/hide
Query:  WWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS
        WW +T L K L+F RD+  + Y +S+  + +  F+  R  L K    +  IDD++D++GTL+EL L T  V + +++
Subjt:  WWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGATGGTGGAAAGAAACAGATTTGGCGAAAGAGTTGAATTTTGCTAGAGATCAACCAATCAAATGGTACATGGCTTCGCTGGTTTGTCTCACAGATTCCTACTTTTCCGA
ACAGAGAGTTGAACTAGCAAAATCCATCTCTTTTGTATATCTCATTGATGATCTTTTTGATGTCTTCGGAACTCTCGATGAACTCACTCTGCTCACAGAAGCTGTCCACA
GGTTAGAAATTAGCTGCATC
mRNA sequenceShow/hide mRNA sequence
AGATGGTGGAAAGAAACAGATTTGGCGAAAGAGTTGAATTTTGCTAGAGATCAACCAATCAAATGGTACATGGCTTCGCTGGTTTGTCTCACAGATTCCTACTTTTCCGA
ACAGAGAGTTGAACTAGCAAAATCCATCTCTTTTGTATATCTCATTGATGATCTTTTTGATGTCTTCGGAACTCTCGATGAACTCACTCTGCTCACAGAAGCTGTCCACA
GGTTAGAAATTAGCTGCATC
Protein sequenceShow/hide protein sequence
RWWKETDLAKELNFARDQPIKWYMASLVCLTDSYFSEQRVELAKSISFVYLIDDLFDVFGTLDELTLLTEAVHRLEISCI