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MS016475 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016475
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold429:83097..83297
RNA-Seq ExpressionMS016475
SyntenyMS016475
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045532.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-0945.9Show/hide
Query:  PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWN
        P++ KFF+W   H+ +NT D +Q+R P MS++P WC   RS+ E ++HLF+ C FA + WN
Subjt:  PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWN

KAA0056839.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.5e-1047.54Show/hide
Query:  PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWN
        P++ KFF+W   H+ +NT DK+Q+R P MS++P WC   RS+ E ++HLF+ C FA   WN
Subjt:  PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWN

KAA0057507.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-0945.9Show/hide
Query:  PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWN
        P++ KFF+W   H+ +NT D +Q+R P MS++P WC   RS+ E ++HLF+ C FA + WN
Subjt:  PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWN

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-0945.9Show/hide
Query:  PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWN
        P++ KFF+W   H+ +NT D +Q+R P MS++P WC   RS+ E ++HLF+ C FA + WN
Subjt:  PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWN

TYK28859.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-0945.9Show/hide
Query:  PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWN
        P++ KFF+W   H+ +NT D +Q+R P MS++P WC   RS+ E ++HLF+ C FA + WN
Subjt:  PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWN

TrEMBL top hitse value%identityAlignment
A0A5A7TQA8 LINE-1 retrotransposable element ORF2 protein6.2e-1045.9Show/hide
Query:  PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWN
        P++ KFF+W   H+ +NT D +Q+R P MS++P WC   RS+ E ++HLF+ C FA + WN
Subjt:  PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWN

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein6.2e-1045.9Show/hide
Query:  PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWN
        P++ KFF+W   H+ +NT D +Q+R P MS++P WC   RS+ E ++HLF+ C FA + WN
Subjt:  PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWN

A0A5A7UTI6 LINE-1 retrotransposable element ORF2 protein3.6e-1047.54Show/hide
Query:  PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWN
        P++ KFF+W   H+ +NT DK+Q+R P MS++P WC   RS+ E ++HLF+ C FA   WN
Subjt:  PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWN

A0A5D3CA17 LINE-1 retrotransposable element ORF2 protein6.2e-1045.9Show/hide
Query:  PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWN
        P++ KFF+W   H+ +NT D +Q+R P MS++P WC   RS+ E ++HLF+ C FA + WN
Subjt:  PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWN

A0A5D3DZM5 LINE-1 retrotransposable element ORF2 protein6.2e-1045.9Show/hide
Query:  PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWN
        P++ KFF+W   H+ +NT D +Q+R P MS++P WC   RS+ E ++HLF+ C FA + WN
Subjt:  PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCTAAAGAAGTAAAATTCTTTCTTTGGGAGTGCAGCCACAGAGCCATCAATACCTCCGATAAGCTCCAAAGAAGAATGCCTTATATGTCCATCTCACCTCACTGGTGCCC
ACTCTCCAGATCAGCCTTCGAATCAATACACCATTTATTTGTTTCGTGTACATTTGCATCAGCCTTTTGGAACTTCCTCCTCCTCTCGTTT
mRNA sequenceShow/hide mRNA sequence
CCTAAAGAAGTAAAATTCTTTCTTTGGGAGTGCAGCCACAGAGCCATCAATACCTCCGATAAGCTCCAAAGAAGAATGCCTTATATGTCCATCTCACCTCACTGGTGCCC
ACTCTCCAGATCAGCCTTCGAATCAATACACCATTTATTTGTTTCGTGTACATTTGCATCAGCCTTTTGGAACTTCCTCCTCCTCTCGTTT
Protein sequenceShow/hide protein sequence
PKEVKFFLWECSHRAINTSDKLQRRMPYMSISPHWCPLSRSAFESIHHLFVSCTFASAFWNFLLLSF