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MS016477 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016477
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold429:83609..84055
RNA-Seq ExpressionMS016477
SyntenyMS016477
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5579293.1 hypothetical protein H5410_049920 [Solanum commersonii]6.7e-2743.24Show/hide
Query:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYGR-STWNQKP
        +PTY  SLFPIP  + ++++   R FLWQGN++ KG +LV WE A    +  GLG+ N+KL N  LL KW WRY +ER++LW+EVI AKYG  + W  + 
Subjt:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYGR-STWNQKP

Query:  VSCTIPISKSPWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPWILDEP
         + T P     WR+I  L   +   +   VG+G  T FWK  W    P
Subjt:  VSCTIPISKSPWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPWILDEP

KAG5608422.1 hypothetical protein H5410_019703 [Solanum commersonii]2.6e-2645.14Show/hide
Query:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYGR-STWNQKP
        LPTY +SLFP P+ + + ++   RNFLW+GN+E K  NLV W+      E  GLG+ N++L N  LL KW WRY++E ++LW+EVI AKYG  + W  K 
Subjt:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYGR-STWNQKP

Query:  VSCTIPISKSPWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPWI
         S   P     WR I  L   +   V   VGNG  T FWK  WI
Subjt:  VSCTIPISKSPWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPWI

KAG5616439.1 hypothetical protein H5410_016263 [Solanum commersonii]1.3e-2541.1Show/hide
Query:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYGRSTWNQKPV
        LPTY +S+FPIP+ I   +++  RNFLWQGN+  KG NLV+W + QQ  +  GLG+ N+K+ N  LL+KW WRY +E  +LW+E+I  KYG     Q+  
Subjt:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYGRSTWNQKPV

Query:  SCTIPISKS----PWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPW
         CT  ++++     WR I  L + +       VG G  T  W   W
Subjt:  SCTIPISKS----PWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPW

XP_016578962.1 PREDICTED: uncharacterized protein LOC107876586 [Capsicum annuum]5.7e-2643.06Show/hide
Query:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYGR-STWNQKP
        LPTY +SLFPIP +I + I    R FLWQGN+E KG NLV+W+I    ++ RGLG+ N+ + N  LL KW WR+  E  +LWR  +  KYG  + W+ + 
Subjt:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYGR-STWNQKP

Query:  VSCTIPISKSPWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPWI
        V  T  +  S W++I +L D  Y  +T  VG+G     W   WI
Subjt:  VSCTIPISKSPWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPWI

XP_019257785.1 PREDICTED: uncharacterized protein LOC109236002 [Nicotiana attenuata]1.0e-2744.44Show/hide
Query:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYG-RSTWNQKP
        LPTY +SLFPIP+ I + I    RNF+WQGN+E  G +LV W++  Q  +  GLG+ N++L N+ LL KW WR+ +E  +LWR+VI  KYG    W  + 
Subjt:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYG-RSTWNQKP

Query:  VSCTIPISKSPWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPWI
        V+ T  +  S WR+I     L  E ++  VGNG  TSFW   W+
Subjt:  VSCTIPISKSPWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPWI

TrEMBL top hitse value%identityAlignment
A0A2N9GLC9 Reverse transcriptase domain-containing protein5.0e-2843.62Show/hide
Query:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYG--RSTWNQK
        LPTYYLSLFPIP +IA  IE   R+FLW G  + +  +LV W+ A  P++G GLG+ NM + N+ LL KW WRY  E SSLWR+VI++KYG     W   
Subjt:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYG--RSTWNQK

Query:  PVSCTIPISKSPWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPWILDEP
         V  T  +S   W+ I    D+    +++ +G+G    FW   W  D P
Subjt:  PVSCTIPISKSPWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPWILDEP

A0A2N9GR14 Reverse transcriptase domain-containing protein5.0e-2843.62Show/hide
Query:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYG--RSTWNQK
        LPTYYLSLFPIP +IA  IE   R+FLW G  + +  +LV W+ A  P++G GLG+ NM + N+ LL KW WRY  E SSLWR+VI++KYG     W   
Subjt:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYG--RSTWNQK

Query:  PVSCTIPISKSPWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPWILDEP
         V  T  +S   W+ I    D+    +++ +G+G    FW   W  D P
Subjt:  PVSCTIPISKSPWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPWILDEP

A0A2N9GZ76 Reverse transcriptase domain-containing protein1.1e-2743.62Show/hide
Query:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYG--RSTWNQK
        LPTY LSLFP+P+++   IE   R+FLW G  + K  +L+RW+    PI+  GL + N++L N+ LL KW WR+ KER  LWR+VIEAKYG  R  W  K
Subjt:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYG--RSTWNQK

Query:  PVSCTIPISKSPWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPWILDEP
         V+   P   S W+ I K  D     ++  +G+G   SFW   W  D P
Subjt:  PVSCTIPISKSPWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPWILDEP

A0A2N9H1P7 Reverse transcriptase domain-containing protein5.0e-2843.62Show/hide
Query:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYG--RSTWNQK
        LPTYYLSLFPIP +IA  IE   R+FLW G  + +  +LV W+ A  P++G GLG+ NM + N+ LL KW WRY  E SSLWR+VI++KYG     W   
Subjt:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYG--RSTWNQK

Query:  PVSCTIPISKSPWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPWILDEP
         V  T  +S   W+ I    D+    +++ +G+G    FW   W  D P
Subjt:  PVSCTIPISKSPWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPWILDEP

A0A2N9I582 Reverse transcriptase domain-containing protein5.0e-2843.62Show/hide
Query:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYG--RSTWNQK
        LPTYYLSLFPIP +IA  IE   R+FLW G  + +  +LV W+ A  P++G GLG+ NM + N+ LL KW WRY  E SSLWR+VI++KYG     W   
Subjt:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYG--RSTWNQK

Query:  PVSCTIPISKSPWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPWILDEP
         V  T  +S   W+ I    D+    +++ +G+G    FW   W  D P
Subjt:  PVSCTIPISKSPWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPWILDEP

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.9e-1631.08Show/hide
Query:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYGRSTWNQKPV
        +P + +S   +P +I   ++   R FLW    E K  +LV+W     P +  GLG+   K +NR L++K  WR L+E++SLW  V++ KY          
Subjt:  LPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYGRSTWNQKPV

Query:  SCTIPISKSPWRAI-IKLQDLIYERVTNAVGNGYGTSFWKSPWILDEP
                S WR+I I L+D++   V    G+G    FW   W+  +P
Subjt:  SCTIPISKSPWRAI-IKLQDLIYERVTNAVGNGYGTSFWKSPWILDEP

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCCACCTACCCACTTATTATCTATCCCTTTTCCCTATTCCATCTGCCATTGCCCAATCTATTGAAAGTTTTATCAGGAATTTTCTTTGGCAGGGCAATCGTGAACACAA
AGGCACAAATCTTGTCAGGTGGGAGATTGCTCAACAACCAATTGAAGGACGAGGATTGGGTCTCAACAATATGAAGCTAATAAACAGGGTGCTCCTTGCTAAATGGACGT
GGAGGTATTTAAAAGAAAGATCATCCCTTTGGAGGGAGGTTATTGAAGCAAAATATGGAAGATCCACCTGGAATCAAAAACCGGTATCCTGCACTATACCGATCTCTAAA
AGTCCTTGGAGAGCTATCATCAAATTACAAGATTTGATCTATGAACGGGTGACTAATGCTGTTGGTAATGGTTATGGTACTTCTTTTTGGAAATCCCCCTGGATTTTGGA
TGAACCT
mRNA sequenceShow/hide mRNA sequence
CTCCACCTACCCACTTATTATCTATCCCTTTTCCCTATTCCATCTGCCATTGCCCAATCTATTGAAAGTTTTATCAGGAATTTTCTTTGGCAGGGCAATCGTGAACACAA
AGGCACAAATCTTGTCAGGTGGGAGATTGCTCAACAACCAATTGAAGGACGAGGATTGGGTCTCAACAATATGAAGCTAATAAACAGGGTGCTCCTTGCTAAATGGACGT
GGAGGTATTTAAAAGAAAGATCATCCCTTTGGAGGGAGGTTATTGAAGCAAAATATGGAAGATCCACCTGGAATCAAAAACCGGTATCCTGCACTATACCGATCTCTAAA
AGTCCTTGGAGAGCTATCATCAAATTACAAGATTTGATCTATGAACGGGTGACTAATGCTGTTGGTAATGGTTATGGTACTTCTTTTTGGAAATCCCCCTGGATTTTGGA
TGAACCT
Protein sequenceShow/hide protein sequence
LHLPTYYLSLFPIPSAIAQSIESFIRNFLWQGNREHKGTNLVRWEIAQQPIEGRGLGLNNMKLINRVLLAKWTWRYLKERSSLWREVIEAKYGRSTWNQKPVSCTIPISK
SPWRAIIKLQDLIYERVTNAVGNGYGTSFWKSPWILDEP