CuGenDBv2

Gene ID	MS016478
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	scaffold429:84159..84467
RNA-Seq Expression	MS016478
Synteny	MS016478
Gene Ontology terms	GO:0006259 - DNA metabolic process (biological process) GO:0016020 - membrane (cellular component) GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

CAN70431.1 hypothetical protein VITISV_030910 [Vitis vinifera]

3.9e-26

54.08

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Query:  LDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG
        L S+A  FDC+   WP +YLGLPL GN +++ FWDPVVE++ +RL  W+ +++S GGR+TLIQ+ LS++P+Y+LSLF IP+++A  IE   RNFLW G
Subjt:  LDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG

CAN75040.1 hypothetical protein VITISV_026478 [Vitis vinifera]

3.0e-26

55.1

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Query:  LDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG
        L S+A  FDC+   WP +YLGLPL GN +++ FWDPVVE++ +RL  W+ +++S GGR+TLIQ+ LS++P+Y+LSLF IP++IA  IE   RNFLW G
Subjt:  LDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG

RVW39368.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]

3.0e-26

55.1

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Query:  LDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG
        L S+A  FDC+   WP +YLGLPL GN +++ FWDPVVE++ +RL  W+ +++S GGR+TLIQ+ LS++P+Y+LSLF IP++IA  IE   RNFLW G
Subjt:  LDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG

RVW64408.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]

3.0e-26

55.1

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Query:  LDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG
        L S+A  FDC+   WP +YLGLPL GN +++ FWDPVVE++ +RL  W+ +++S GGR+TLIQ+ LS++P+Y+LSLF IP++IA  IE   RNFLW G
Subjt:  LDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG

VVA30963.1 Hypothetical predicted protein, partial [Prunus dulcis]

1.0e-26

55.1

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Query:  LDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG
        L+++A ++ C+ G WP  YLGLPL GN R+L+FW+PV +KV+KRL  W+ + +SKGGRLTLIQA LS++P+YY+SLF +P+ +A  +E  +RNFLW+G
Subjt:  LDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG

TrEMBL top hits

e value

%identity

Alignment

A0A5E4FU33 zf-RVT domain-containing protein (Fragment)

5.0e-27

55.1

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Query:  LDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG
        L+++A ++ C+ G WP  YLGLPL GN R+L+FW+PV +KV+KRL  W+ + +SKGGRLTLIQA LS++P+YY+SLF +P+ +A  +E  +RNFLW+G
Subjt:  LDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG

M5WJ76 Reverse transcriptase domain-containing protein (Fragment)

3.8e-27

56.12

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Query:  LDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG
        L+++A ++ C+ G WP  YLGLPL GN R+L+FW+PV+EKV+KRL  W+ + +SKGGRLTLIQA LS++P+YY+SLF +P  +A  +E  +RNFLW+G
Subjt:  LDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG

M5WPQ5 Reverse transcriptase domain-containing protein

5.0e-27

56.12

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Query:  LDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG
        L+++A ++ C+ G WP  YLGLPL GN R+L+FW+PV+EKV+KRL  W+ + +SKGGRLTLIQA LS++P+YY+SLF +P  +A  +E  +RNFLW+G
Subjt:  LDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG

M5WZA0 Reverse transcriptase domain-containing protein (Fragment)

2.3e-27

56.12

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Query:  LDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG
        L+++A ++ C+ G WP  YLGLPL GN R+L+FW+PVV+KV+KRL  W+ + +SKGGRLTLIQA LS++P+YY+SLF +P  +A  +E  +RNFLW+G
Subjt:  LDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG

M5X4S0 Reverse transcriptase domain-containing protein (Fragment)

3.8e-27

56.12

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Query:  LDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG
        L+++A ++ C+ G WP  YLGLPL GN R+L+FW+PV+EKV+KRL  W+ + +SKGGRLTLIQA LS++P+YY+SLF +P  +A  +E  +RNFLW+G
Subjt:  LDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

1.6e-06

36.67

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Query:  VVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLW
        ++E+V  R+  WR   +S  GRLTL +A LS++P + +S   +P +I   ++   R FLW
Subjt:  VVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLW

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

3.1e-13

36.96

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Query:  NFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG
        +F    G+ P  YLGLPL     + S + P+VEK++ R+  W    +S  GRL LI + + +L  +++S F +PSA  + I+S   +FLW G
Subjt:  NFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG

Sequences

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CDS sequence

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TTGGACGCAAGCGAGCTAGATTCCATAGCTATAAATTTTGATTGCAAAAAGGGTTCATGGCCTAATACCTATCTCGGGCTTCCACTTCATGGCAATTATAGATCTCTATC
ATTTTGGGACCCGGTGGTAGAGAAAGTGAAGAAAAGATTACTCTCTTGGAGGAACTCGTTCATCTCAAAAGGGGGACGGCTTACCCTCATCCAAGCTACTCTCTCCAACC
TACCCACTTATTATCTATCCCTTTTCCCTATTCCATCAGCCATTGCCCAATCTATTGAAAGTTTTATCAGGAATTTTCTTTGGCAGGGC

mRNA sequence

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Protein sequence

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LDASELDSIAINFDCKKGSWPNTYLGLPLHGNYRSLSFWDPVVEKVKKRLLSWRNSFISKGGRLTLIQATLSNLPTYYLSLFPIPSAIAQSIESFIRNFLWQG

MS016478 (gene) of Bitter gourd (TR) v1 genome