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MS016479 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016479
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold429:85197..85409
RNA-Seq ExpressionMS016479
SyntenyMS016479
Gene Ontology termsGO:0016070 - RNA metabolic process (biological process)
GO:0005622 - intracellular (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016772 - transferase activity, transferring phosphorus-containing groups (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEY27259.1 RNA-directed DNA polymerase, eukaryota [Tanacetum cinerariifolium]3.9e-0949.18Show/hide
Query:  SPQQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFKT
        SP+QN+D+E   T EEI +A+ D GTNKSP  DGFT +F++ +W  +  D++   QDFF T
Subjt:  SPQQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFKT
KAE8655648.1 hypothetical protein F3Y22_tig00117021pilonHSYRG00103 [Hibiscus syriacus]1.8e-0951.72Show/hide
Query:  QQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFK
        +Q L +E+PF+EEE+WRA+ D  +NK+P  DG    F+K FW+ LK DIM  F+DFF+
Subjt:  QQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFK
KAE8673743.1 Gamma-tubulin complex component 2 [Hibiscus syriacus]2.3e-0950.88Show/hide
Query:  QQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFF
        +Q   +EQ F+EEE+W  VK  G+NK+P  DGF   F+K FW +LK DIM+ F DF+
Subjt:  QQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFF
KAE8682317.1 Polynucleotide adenylyltransferase family protein isoform 4 [Hibiscus syriacus]6.1e-1051.67Show/hide
Query:  SPQQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFK
        S +Q L +E+PF+EEE+WRA+ D  +NK+P  DG    F+K FW+ LK DIM  F+DFF+
Subjt:  SPQQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFK
XP_023518084.1 uncharacterized protein LOC111781628 [Cucurbita pepo subsp. pepo]1.8e-0950Show/hide
Query:  QQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFKTG
        QQ   +E  FTEEE+ +A+++LG++K+   DGFT+EF++  WN ++ DIMRVF DFF+ G
Subjt:  QQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFKTG
TrEMBL top hitse value%identityAlignment
A0A6A2WCT8 Reverse transcriptase domain-containing protein8.6e-1051.72Show/hide
Query:  QQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFK
        +Q L +E+PF+EEE+WRA+ D  +NK+P  DG    F+K FW+ LK DIM  F+DFF+
Subjt:  QQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFK
A0A6A2XDI7 Gamma-tubulin complex component 21.1e-0950.88Show/hide
Query:  QQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFF
        +Q   +EQ F+EEE+W  VK  G+NK+P  DGF   F+K FW +LK DIM+ F DF+
Subjt:  QQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFF
A0A6A2YSK0 Polynucleotide adenylyltransferase family protein isoform 42.9e-1051.67Show/hide
Query:  SPQQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFK
        S +Q L +E+PF+EEE+WRA+ D  +NK+P  DG    F+K FW+ LK DIM  F+DFF+
Subjt:  SPQQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFK
A0A6A3C1N6 Pentatricopeptide repeat-containing protein9.5e-0949.15Show/hide
Query:  SPQQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFF
        SPQQNL +E+ FTE+EIW  +    +NK+P  DG    F+KNFW  LK DI++ F +F+
Subjt:  SPQQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFF
A0A6A3C8D3 RNF214 protein9.5e-0947.46Show/hide
Query:  SPQQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFF
        S +QNL +E+ FTEEE+W  ++   +NK+P  DG    F+K FW +LK DIM+ F DF+
Subjt:  SPQQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFF
SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein1.8e-0440Show/hide
Query:  IEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFKTG
        + +P T  EI   +  L T KSP  DGFTAEFY+ +   L   ++++FQ   K G
Subjt:  IEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFKTG
P08548 LINE-1 reverse transcriptase homolog8.8e-0436.36Show/hide
Query:  IEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFKTG
        + +P +  EI   +++L   KSP  DGFT+EFY+ F   L   ++ +FQ+  K G
Subjt:  IEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFKTG
P14381 Transposon TX1 uncharacterized 149 kDa protein1.9e-0643.64Show/hide
Query:  IEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFKTG
        +E P T +E+ +A++ +  NKSP LDG T EF++ FW+ L  D  RV  + FK G
Subjt:  IEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFKTG
Arabidopsis top hitse value%identityAlignment
AT1G43760.1 DNAse I-like superfamily protein8.2e-0538Show/hide
Query:  TEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFKTG
        +++EI  AV  +  NK+P  D FTAEF+   W ++K   +   ++FF+TG
Subjt:  TEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFKTG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTCATTTTGAATATTGCTCTCAGAATTCTCCACAACAAAACCTTGATATTGAACAACCTTTTACAGAGGAAGAGATTTGGCGAGCTGTCAAGGACTTAGGGACGAACAA
GTCCCCTAGCTTGGATGGATTCACAGCCGAGTTCTATAAAAATTTTTGGAACATCCTCAAGGCTGACATCATGAGAGTGTTCCAAGATTTTTTTAAAACCGGA
mRNA sequenceShow/hide mRNA sequence
TTTCATTTTGAATATTGCTCTCAGAATTCTCCACAACAAAACCTTGATATTGAACAACCTTTTACAGAGGAAGAGATTTGGCGAGCTGTCAAGGACTTAGGGACGAACAA
GTCCCCTAGCTTGGATGGATTCACAGCCGAGTTCTATAAAAATTTTTGGAACATCCTCAAGGCTGACATCATGAGAGTGTTCCAAGATTTTTTTAAAACCGGA
Protein sequenceShow/hide protein sequence
FHFEYCSQNSPQQNLDIEQPFTEEEIWRAVKDLGTNKSPSLDGFTAEFYKNFWNILKADIMRVFQDFFKTG