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MS016484 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016484
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold429:235107..235509
RNA-Seq ExpressionMS016484
SyntenyMS016484
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG9449628.1 hypothetical protein H6P81_009593 [Aristolochia fimbriata]2.4e-0734.82Show/hide
Query:  GLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGEEGLSISLGLPRSLTDRESSR---FLIYWISCLFVGR-EDVRVWTPNPSKGFSYSSFF
        G+ T+FW D WIG+ P C ++PR+Y LS++   LV+  +    EG + +L L R+L D E++     ++   S  F  R  D  +W+P  S  FS SS++
Subjt:  GLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGEEGLSISLGLPRSLTDRESSR---FLIYWISCLFVGR-EDVRVWTPNPSKGFSYSSFF

Query:  HVLNSSSSSSSS
         +L++S     S
Subjt:  HVLNSSSSSSSS

MCH87148.1 LINE-1 reverse transcriptase like [Trifolium medium]1.2e-0637.14Show/hide
Query:  GGGLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGE-EGLSISLGLPRSLTDRESS---RFLIYWISCLFVGREDVRVWTPNPSKGFSYSS
        G GL+T FW D WIG  P C+ FPR++ LS +KL  + +V+  GE E    +L   RSL   E     + L    +  F   ED   W  NP   FS  S
Subjt:  GGGLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGE-EGLSISLGLPRSLTDRESS---RFLIYWISCLFVGREDVRVWTPNPSKGFSYSS

Query:  FFHVL
         +  L
Subjt:  FFHVL

TYK09969.1 calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa]3.1e-0737.19Show/hide
Query:  LCGGGLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGEEGLSISLGLPRSLTDRESSRFLIYWISCL-----FVGREDVRVWTPNPSKGFS
        L  GG    F      G +P C  FP +Y LS  K   + + L +     S S G  R+L+DRE+S  ++  IS L      +GR DV VW+P P +GF 
Subjt:  LCGGGLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGEEGLSISLGLPRSLTDRESSRFLIYWISCL-----FVGREDVRVWTPNPSKGFS

Query:  YSSFFHVLNSSSSSSSSLSLL
          SFF  L +S+ +S S+S L
Subjt:  YSSFFHVLNSSSSSSSSLSLL

XP_022151711.1 uncharacterized protein LOC111019624 [Momordica charantia]3.4e-3060.99Show/hide
Query:  FPFFLSFFTCLCGGGLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGEEGLSISLGLPRSLTDRESSRF-----LIYWISCLFVGREDVRV
        FP F        G GLN YFWEDTW+GNKP  LAFPRIYFLS+KKL  V EVL+FGEE  SISLGL RSLTD ES        L+  +SC   GREDVRV
Subjt:  FPFFLSFFTCLCGGGLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGEEGLSISLGLPRSLTDRESSRF-----LIYWISCLFVGREDVRV

Query:  WTPNPSKGFSYSSFFHVLNSSS--------SSSSSLSLLTP
        W PNP  GFS SSFF VL S S        SSSSS SL+TP
Subjt:  WTPNPSKGFSYSSFFHVLNSSS--------SSSSSLSLLTP

XP_024642295.1 uncharacterized protein LOC112422838 [Medicago truncatula]9.1e-0731.09Show/hide
Query:  GGGLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGEEGLSISLGLPRSLTDRESSRFL----IYWISCLFVGREDVRVWTPNPSKGFSYS-
        G G NT FW D W+ + PSC+ F R+Y LS+ KL  V ++ S+G +    +    R + D E    +    +   + L V  EDV  WTP+P +G++ S 
Subjt:  GGGLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGEEGLSISLGLPRSLTDRESSRFL----IYWISCLFVGREDVRVWTPNPSKGFSYS-

Query:  SFFHVLNSSSSSSSSLSLL
        ++  +++ +  +++ L+ L
Subjt:  SFFHVLNSSSSSSSSLSLL

TrEMBL top hitse value%identityAlignment
A0A392MK96 LINE-1 reverse transcriptase like (Fragment)5.7e-0737.14Show/hide
Query:  GGGLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGE-EGLSISLGLPRSLTDRESS---RFLIYWISCLFVGREDVRVWTPNPSKGFSYSS
        G GL+T FW D WIG  P C+ FPR++ LS +KL  + +V+  GE E    +L   RSL   E     + L    +  F   ED   W  NP   FS  S
Subjt:  GGGLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGE-EGLSISLGLPRSLTDRESS---RFLIYWISCLFVGREDVRVWTPNPSKGFSYSS

Query:  FFHVL
         +  L
Subjt:  FFHVL

A0A5D3CI74 Calpain-type cysteine protease DEK11.5e-0737.19Show/hide
Query:  LCGGGLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGEEGLSISLGLPRSLTDRESSRFLIYWISCL-----FVGREDVRVWTPNPSKGFS
        L  GG    F      G +P C  FP +Y LS  K   + + L +     S S G  R+L+DRE+S  ++  IS L      +GR DV VW+P P +GF 
Subjt:  LCGGGLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGEEGLSISLGLPRSLTDRESSRFLIYWISCL-----FVGREDVRVWTPNPSKGFS

Query:  YSSFFHVLNSSSSSSSSLSLL
          SFF  L +S+ +S S+S L
Subjt:  YSSFFHVLNSSSSSSSSLSLL

A0A6J1DFI2 uncharacterized protein LOC1110196241.7e-3060.99Show/hide
Query:  FPFFLSFFTCLCGGGLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGEEGLSISLGLPRSLTDRESSRF-----LIYWISCLFVGREDVRV
        FP F        G GLN YFWEDTW+GNKP  LAFPRIYFLS+KKL  V EVL+FGEE  SISLGL RSLTD ES        L+  +SC   GREDVRV
Subjt:  FPFFLSFFTCLCGGGLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGEEGLSISLGLPRSLTDRESSRF-----LIYWISCLFVGREDVRV

Query:  WTPNPSKGFSYSSFFHVLNSSS--------SSSSSLSLLTP
        W PNP  GFS SSFF VL S S        SSSSS SL+TP
Subjt:  WTPNPSKGFSYSSFFHVLNSSS--------SSSSSLSLLTP

A0A7J6WT63 Uncharacterized protein3.7e-0633.33Show/hide
Query:  FPFFLSFFTCLCGGGLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGEEGLSISLGLPRSLTDRESSR---FLIYWISCLFVGREDVRVWT
        F  F+S   C  G G    FW D W+G+K  CL FP I+ +S+ K   V  +   G         L R L D E S+    L+   +  F   +D   W 
Subjt:  FPFFLSFFTCLCGGGLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGEEGLSISLGLPRSLTDRESSR---FLIYWISCLFVGREDVRVWT

Query:  PNPSKGFSYSSFFHVLN
         N S  FS SSF+  L+
Subjt:  PNPSKGFSYSSFFHVLN

C7J5V5 Os08g0476600 protein1.7e-0638.46Show/hide
Query:  FLSFFTCLCGGGLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGEEGLSISLGLPRSLTDRESSRFLIYWISCLFVGR-------EDVRVW
        F  F     G G NT F ED+WIG +P    FP +Y +S  K+ LV +VLS   EGL  +L   R+LTD++    L  WIS  F+ +       +D   W
Subjt:  FLSFFTCLCGGGLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGEEGLSISLGLPRSLTDRESSRFLIYWISCLFVGR-------EDVRVW

Query:  TPNPSKGFSYSSFFHVL
          N S  FS  SF+  L
Subjt:  TPNPSKGFSYSSFFHVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAAGGCTATTGCTTTGGGTTTCCCTTTTTTCTCTCTTTCTTTACGTGTCTCTGTGGGGGAGGTCTTAATACGTACTTCTGGGAGGATACTTGGATAGGCAACAAACCCTC
GTGTCTTGCTTTCCCTCGGATCTACTTTCTATCCGATAAGAAACTCCCTTTAGTGACCGAGGTTTTAAGTTTTGGAGAAGAGGGTTTGTCCATCTCTTTGGGGCTCCCCC
GTTCCTTGACTGATCGGGAATCGTCAAGGTTTTTGATTTACTGGATCAGTTGTCTATTTGTTGGGAGGGAAGATGTGAGGGTGTGGACCCCCAATCCTTCGAAAGGTTTT
TCTTATAGCTCTTTTTTCCATGTCCTGAACTCCTCGTCGTCCTCTTCTTCTTCTCTGTCCCTGTTGACCCCT
mRNA sequenceShow/hide mRNA sequence
GAAGGCTATTGCTTTGGGTTTCCCTTTTTTCTCTCTTTCTTTACGTGTCTCTGTGGGGGAGGTCTTAATACGTACTTCTGGGAGGATACTTGGATAGGCAACAAACCCTC
GTGTCTTGCTTTCCCTCGGATCTACTTTCTATCCGATAAGAAACTCCCTTTAGTGACCGAGGTTTTAAGTTTTGGAGAAGAGGGTTTGTCCATCTCTTTGGGGCTCCCCC
GTTCCTTGACTGATCGGGAATCGTCAAGGTTTTTGATTTACTGGATCAGTTGTCTATTTGTTGGGAGGGAAGATGTGAGGGTGTGGACCCCCAATCCTTCGAAAGGTTTT
TCTTATAGCTCTTTTTTCCATGTCCTGAACTCCTCGTCGTCCTCTTCTTCTTCTCTGTCCCTGTTGACCCCT
Protein sequenceShow/hide protein sequence
EGYCFGFPFFLSFFTCLCGGGLNTYFWEDTWIGNKPSCLAFPRIYFLSDKKLPLVTEVLSFGEEGLSISLGLPRSLTDRESSRFLIYWISCLFVGREDVRVWTPNPSKGF
SYSSFFHVLNSSSSSSSSLSLLTP