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MS016485 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016485
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold429:240480..240954
RNA-Seq ExpressionMS016485
SyntenyMS016485
Gene Ontology termsGO:0050789 - regulation of biological process (biological process)
GO:0005622 - intracellular (cellular component)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW51835.1 putative ribonuclease H protein [Vitis vinifera]3.5e-1840.16Show/hide
Query:  RSPKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLF--VGSPRKGSL
        +SP KL+ L+W++  +K+NT D LQL+R + ALSP +C LC E  ES  HLFL C      W+ LF+  +  + W  PKS  + +F  +   G  ++G L
Subjt:  RSPKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLF--VGSPRKGSL

Query:  AIWRNAVAAFVWRMWLERNQRVFKAKS
         +W+NA    +W +W ERN R+F+ K+
Subjt:  AIWRNAVAAFVWRMWLERNQRVFKAKS

TQD89699.1 hypothetical protein C1H46_024693 [Malus baccata]3.5e-1836.13Show/hide
Query:  PKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLFVG-SPRKGSLAIW
        P K+K+L+W++    LNTCDR+Q +   M LSP  C LC+   ES +H+FL C ++   W+ L  F+E   SW +PK C E +   F     RK S  +W
Subjt:  PKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLFVG-SPRKGSLAIW

Query:  RNAVAAFVWRMWLERNQRVFKAKSLLRKD--FGKLFVLLLFSWCLIDKLFCNYSI
           V A  W +W+ERN+R+F+  + +  +  +G++     F W  + K F N S+
Subjt:  RNAVAAFVWRMWLERNQRVFKAKSLLRKD--FGKLFVLLLFSWCLIDKLFCNYSI

TQE05898.1 hypothetical protein C1H46_008581 [Malus baccata]4.1e-1939.84Show/hide
Query:  RSPKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLFVGSPR-KGSLA
        ++P K+K+L+W++    LNTCD++Q +   M LSP  C LC+   ES +H+FL C ++   W+ L  F+E  +SW +PK C E +   F    + K S A
Subjt:  RSPKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLFVGSPR-KGSLA

Query:  IWRNAVAAFVWRMWLERNQRVFK
        +W   V+A  W +WLERN+R+F+
Subjt:  IWRNAVAAFVWRMWLERNQRVFK

XP_022153214.1 uncharacterized protein LOC111020765 [Momordica charantia]2.4e-1937.34Show/hide
Query:  RSPKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLFVGSPRKGSLA-
        +SP+++ V  WIL+Q KLNT D +Q K  + AL PS C LC ++ E H HLF  C FA+  W  L  F +F + WC      + ++QL  G P   S   
Subjt:  RSPKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLFVGSPRKGSLA-

Query:  -IWRNAVAAFVWRMWLERNQRVFKAKSLLRKDFGKLFVLLLFS---WCLIDKLFCNYS
         +W N V A +  +W ERN R+F+ K   R+ F + F    F    WC +   F ++S
Subjt:  -IWRNAVAAFVWRMWLERNQRVFKAKSLLRKDFGKLFVLLLFS---WCLIDKLFCNYS

XP_028960603.1 uncharacterized protein LOC114825746 [Malus domestica]3.2e-1937.04Show/hide
Query:  PKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLF--VGSPRKGSLAI
        P K+K+L+W+  + KLNTCD++Q +   + LSP  C LC+   ES +H+FL C +    W+ L  F+E   SW +PK C E +   F  +GS RK   A+
Subjt:  PKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLF--VGSPRKGSLAI

Query:  WRNAVAAFVWRMWLERNQRVFKAKSLLRKDFGKLFVLLLFS--------WCLIDKLFCNYSI
        W   V+A  W +WLERN+R+F       +D+  + V +L+         W  +  +F NYSI
Subjt:  WRNAVAAFVWRMWLERNQRVFKAKSLLRKDFGKLFVLLLFS--------WCLIDKLFCNYSI

TrEMBL top hitse value%identityAlignment
A0A438EVW8 Putative ribonuclease H protein1.7e-1840.16Show/hide
Query:  RSPKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLF--VGSPRKGSL
        +SP KL+ L+W++  +K+NT D LQL+R + ALSP +C LC E  ES  HLFL C      W+ LF+  +  + W  PKS  + +F  +   G  ++G L
Subjt:  RSPKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLF--VGSPRKGSL

Query:  AIWRNAVAAFVWRMWLERNQRVFKAKS
         +W+NA    +W +W ERN R+F+ K+
Subjt:  AIWRNAVAAFVWRMWLERNQRVFKAKS

A0A540LFH9 zf-RVT domain-containing protein2.2e-1835.67Show/hide
Query:  RSPKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLFVGSPR-KGSLA
        ++P K+K+L+W +    LNTCD++Q +   M LSP  C LC+   ES +H+FL C ++   W+ L  F+E  +SW +PK C E +   F    + K S A
Subjt:  RSPKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLFVGSPR-KGSLA

Query:  IWRNAVAAFVWRMWLERNQRVFKAKSLLRKD--FGKLFVLLLFSWCLIDKLFCNYSI
        +W   V+A  W +WLERN+R+F+  + +  +  +G++     F W  + K F N S+
Subjt:  IWRNAVAAFVWRMWLERNQRVFKAKSLLRKD--FGKLFVLLLFSWCLIDKLFCNYSI

A0A540LTR6 zf-RVT domain-containing protein1.7e-1836.13Show/hide
Query:  PKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLFVG-SPRKGSLAIW
        P K+K+L+W++    LNTCDR+Q +   M LSP  C LC+   ES +H+FL C ++   W+ L  F+E   SW +PK C E +   F     RK S  +W
Subjt:  PKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLFVG-SPRKGSLAIW

Query:  RNAVAAFVWRMWLERNQRVFKAKSLLRKD--FGKLFVLLLFSWCLIDKLFCNYSI
           V A  W +W+ERN+R+F+  + +  +  +G++     F W  + K F N S+
Subjt:  RNAVAAFVWRMWLERNQRVFKAKSLLRKD--FGKLFVLLLFSWCLIDKLFCNYSI

A0A540N4B1 zf-RVT domain-containing protein2.0e-1939.84Show/hide
Query:  RSPKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLFVGSPR-KGSLA
        ++P K+K+L+W++    LNTCD++Q +   M LSP  C LC+   ES +H+FL C ++   W+ L  F+E  +SW +PK C E +   F    + K S A
Subjt:  RSPKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLFVGSPR-KGSLA

Query:  IWRNAVAAFVWRMWLERNQRVFK
        +W   V+A  W +WLERN+R+F+
Subjt:  IWRNAVAAFVWRMWLERNQRVFK

A0A6J1DIE2 uncharacterized protein LOC1110207651.2e-1937.34Show/hide
Query:  RSPKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLFVGSPRKGSLA-
        +SP+++ V  WIL+Q KLNT D +Q K  + AL PS C LC ++ E H HLF  C FA+  W  L  F +F + WC      + ++QL  G P   S   
Subjt:  RSPKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLFVGSPRKGSLA-

Query:  -IWRNAVAAFVWRMWLERNQRVFKAKSLLRKDFGKLFVLLLFS---WCLIDKLFCNYS
         +W N V A +  +W ERN R+F+ K   R+ F + F    F    WC +   F ++S
Subjt:  -IWRNAVAAFVWRMWLERNQRVFKAKSLLRKDFGKLFVLLLFS---WCLIDKLFCNYS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G25270.1 Ribonuclease H-like superfamily protein6.6e-0731.01Show/hide
Query:  RSPKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGW-YSLFKFKEFGLSWCLPKSCQEAIFQLFVGS--PRKGS
        ++  K+K  LW L    L T D   LKRR++   P  C  C +  E+  HLF  C +A   W  S    +E   +    ++  E +    + +  P+  +
Subjt:  RSPKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGW-YSLFKFKEFGLSWCLPKSCQEAIFQLFVGS--PRKGS

Query:  LAIWRNAVAAFVWRMWLERNQRVFKAKSL
        LAIW       +WR+W  RNQ VF+ KS+
Subjt:  LAIWRNAVAAFVWRMWLERNQRVFKAKSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGATCCCCAAAAAAGTTGAAAGTTCTTTTGTGGATTCTTTATCAGGAAAAGCTGAATACTTGTGATAGACTGCAGTTGAAGAGGCGAAATATGGCTTTGTCCCCTAGCTT
GTGCGTTTTATGTAGAGAGAATTTGGAATCTCACTCCCATCTTTTTCTATTTTGTGGTTTTGCTACCGATGGTTGGTATTCATTGTTCAAGTTCAAGGAGTTTGGCTTGA
GCTGGTGCTTACCTAAGAGTTGCCAAGAGGCCATTTTCCAGCTGTTTGTAGGTTCCCCTCGAAAAGGAAGCTTGGCTATTTGGCGTAATGCAGTTGCTGCCTTTGTTTGG
AGGATGTGGCTTGAGAGGAATCAGAGAGTCTTTAAAGCAAAGAGTCTTCTACGCAAGGATTTTGGGAAACTGTTCGTACTTTTGCTTTTTTCTTGGTGTCTCATTGATAA
GCTTTTTTGTAATTATAGCATTGAGAAT
mRNA sequenceShow/hide mRNA sequence
AGATCCCCAAAAAAGTTGAAAGTTCTTTTGTGGATTCTTTATCAGGAAAAGCTGAATACTTGTGATAGACTGCAGTTGAAGAGGCGAAATATGGCTTTGTCCCCTAGCTT
GTGCGTTTTATGTAGAGAGAATTTGGAATCTCACTCCCATCTTTTTCTATTTTGTGGTTTTGCTACCGATGGTTGGTATTCATTGTTCAAGTTCAAGGAGTTTGGCTTGA
GCTGGTGCTTACCTAAGAGTTGCCAAGAGGCCATTTTCCAGCTGTTTGTAGGTTCCCCTCGAAAAGGAAGCTTGGCTATTTGGCGTAATGCAGTTGCTGCCTTTGTTTGG
AGGATGTGGCTTGAGAGGAATCAGAGAGTCTTTAAAGCAAAGAGTCTTCTACGCAAGGATTTTGGGAAACTGTTCGTACTTTTGCTTTTTTCTTGGTGTCTCATTGATAA
GCTTTTTTGTAATTATAGCATTGAGAAT
Protein sequenceShow/hide protein sequence
RSPKKLKVLLWILYQEKLNTCDRLQLKRRNMALSPSLCVLCRENLESHSHLFLFCGFATDGWYSLFKFKEFGLSWCLPKSCQEAIFQLFVGSPRKGSLAIWRNAVAAFVW
RMWLERNQRVFKAKSLLRKDFGKLFVLLLFSWCLIDKLFCNYSIEN