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MS016498 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016498
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein farnesyltransferase subunit beta
Genome locationscaffold657:181791..183183
RNA-Seq ExpressionMS016498
SyntenyMS016498
Gene Ontology termsGO:0018343 - protein farnesylation (biological process)
GO:0005965 - protein farnesyltransferase complex (cellular component)
GO:0004660 - protein farnesyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR008930 - Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
IPR045089 - Prenyltransferase subunit beta


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141090.1 protein farnesyltransferase subunit beta [Cucumis sativus]5.7e-5387.18Show/hide
Query:  MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDF
        M+AP   +LT TQ+NQRMVE EVARIYDFF R+PR+AQEFMLELQRENHIEYLTNGL+HLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEAR IDF
Subjt:  MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDF

Query:  LNRCQDPNGGYGGGPGQ
        LNRCQD +GGYGGGPGQ
Subjt:  LNRCQDPNGGYGGGPGQ

XP_008443518.1 PREDICTED: protein farnesyltransferase subunit beta [Cucumis melo]3.9e-5488.03Show/hide
Query:  MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDF
        M+AP P +LT TQ+NQRMVE EVARIYDFF R+PR+AQEFMLELQRENHIEYLTNGL+HLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEAR IDF
Subjt:  MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDF

Query:  LNRCQDPNGGYGGGPGQ
        LNRCQD  GGYGGGPGQ
Subjt:  LNRCQDPNGGYGGGPGQ

XP_022158918.1 protein farnesyltransferase subunit beta [Momordica charantia]2.5e-6199.15Show/hide
Query:  MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDF
        MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSV AELEARTIDF
Subjt:  MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDF

Query:  LNRCQDPNGGYGGGPGQ
        LNRCQDPNGGYGGGPGQ
Subjt:  LNRCQDPNGGYGGGPGQ

XP_022934867.1 protein farnesyltransferase subunit beta [Cucurbita moschata]1.8e-5184.62Show/hide
Query:  MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDF
        M+A    +LT+TQ+ QRMVE EVARIYDFF R+PR+AQEFMLELQRE+HIEYLTNGL+HLGPSFRVLDANRPWICYWILHSIALLGDSVDAELE R IDF
Subjt:  MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDF

Query:  LNRCQDPNGGYGGGPGQ
        LNRCQDP+GGYGGGPGQ
Subjt:  LNRCQDPNGGYGGGPGQ

XP_038903092.1 protein farnesyltransferase subunit beta [Benincasa hispida]1.3e-5285.47Show/hide
Query:  MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDF
        M+AP P ELTVTQ+NQRMVE EVARIY+FF R+P +AQEF+LEL RENHIEYLTNGL+HLGPSFRVLDANRPWICYWILHSIALLGDSVD ELE R IDF
Subjt:  MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDF

Query:  LNRCQDPNGGYGGGPGQ
        LNRCQDP+GGYGGGPGQ
Subjt:  LNRCQDPNGGYGGGPGQ

TrEMBL top hitse value%identityAlignment
A0A0A0LG61 Protein farnesyltransferase subunit beta2.7e-5387.18Show/hide
Query:  MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDF
        M+AP   +LT TQ+NQRMVE EVARIYDFF R+PR+AQEFMLELQRENHIEYLTNGL+HLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEAR IDF
Subjt:  MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDF

Query:  LNRCQDPNGGYGGGPGQ
        LNRCQD +GGYGGGPGQ
Subjt:  LNRCQDPNGGYGGGPGQ

A0A1S3B910 Protein farnesyltransferase subunit beta1.9e-5488.03Show/hide
Query:  MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDF
        M+AP P +LT TQ+NQRMVE EVARIYDFF R+PR+AQEFMLELQRENHIEYLTNGL+HLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEAR IDF
Subjt:  MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDF

Query:  LNRCQDPNGGYGGGPGQ
        LNRCQD  GGYGGGPGQ
Subjt:  LNRCQDPNGGYGGGPGQ

A0A6J1DXE6 Protein farnesyltransferase subunit beta1.2e-6199.15Show/hide
Query:  MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDF
        MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSV AELEARTIDF
Subjt:  MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDF

Query:  LNRCQDPNGGYGGGPGQ
        LNRCQDPNGGYGGGPGQ
Subjt:  LNRCQDPNGGYGGGPGQ

A0A6J1F3Z8 Protein farnesyltransferase subunit beta8.8e-5284.62Show/hide
Query:  MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDF
        M+A    +LT+TQ+ QRMVE EVARIYDFF R+PR+AQEFMLELQRE+HIEYLTNGL+HLGPSFRVLDANRPWICYWILHSIALLGDSVDAELE R IDF
Subjt:  MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDF

Query:  LNRCQDPNGGYGGGPGQ
        LNRCQDP+GGYGGGPGQ
Subjt:  LNRCQDPNGGYGGGPGQ

A0A6J1J3Q0 Protein farnesyltransferase subunit beta8.8e-5284.62Show/hide
Query:  MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDF
        M+A    +LT+TQ+ QRMVE EVARIYDFF R+PR+AQEFMLELQRE+HIEYLTNGL+HLGPSFRVLDANRPWICYWILHSIALLGDSVDAELE R IDF
Subjt:  MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDF

Query:  LNRCQDPNGGYGGGPGQ
        LNRCQDP+GGYGGGPGQ
Subjt:  LNRCQDPNGGYGGGPGQ

SwissProt top hitse value%identityAlignment
P49355 Protein farnesyltransferase subunit beta6.6e-2044.14Show/hide
Query:  TVTQRNQRMVESEVARI---YDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDFLNRCQD
        TVT   Q  VE ++  +   Y F    PR      L LQRE H  YL  GL  L  ++  LDA+RPW+CYWILHS+ LL + +   +      FL  CQ 
Subjt:  TVTQRNQRMVESEVARI---YDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDFLNRCQD

Query:  PNGGYGGGPGQ
        P GG+GGGPGQ
Subjt:  PNGGYGGGPGQ

P49356 Protein farnesyltransferase subunit beta8.6e-2044.14Show/hide
Query:  TVTQRNQRMVESEVARI---YDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDFLNRCQD
        TVT   Q  VE ++  +   Y F    PR      L LQRE H  YL  GL  L  ++  LDA+RPW+CYWILHS+ LL + +   +      FL  CQ 
Subjt:  TVTQRNQRMVESEVARI---YDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDFLNRCQD

Query:  PNGGYGGGPGQ
        P GG+GGGPGQ
Subjt:  PNGGYGGGPGQ

Q02293 Protein farnesyltransferase subunit beta6.6e-2044.14Show/hide
Query:  TVTQRNQRMVESEVARI---YDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDFLNRCQD
        TVT   Q  VE ++  +   Y F    PR      L LQRE H  YL  GL  L  ++  LDA+RPW+CYWILHS+ LL + +   +      FL  CQ 
Subjt:  TVTQRNQRMVESEVARI---YDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDFLNRCQD

Query:  PNGGYGGGPGQ
        P+GG+GGGPGQ
Subjt:  PNGGYGGGPGQ

Q04903 Protein farnesyltransferase subunit beta3.1e-2246.67Show/hide
Query:  MDAPAPAEL---TVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEART
        M+A   AE    TV+QR+Q +VES+V  IY  F   P  AQ  +                             RPW+CYWI+HSIALLG+S+D +LE  T
Subjt:  MDAPAPAEL---TVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEART

Query:  IDFLNRCQDPNGGYGGGPGQ
        +DFLNRCQDPNGGY GGPGQ
Subjt:  IDFLNRCQDPNGGYGGGPGQ

Q38920 Protein farnesyltransferase subunit beta5.5e-3559.46Show/hide
Query:  AELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDFLNRCQD
        + LTV+QR Q +VE++V  IY++F  S  + Q++M+E+QR+  ++YL  GL  LGP F  LDANRPW+CYWILHSIALLG++VD ELE+  IDFL RCQ 
Subjt:  AELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDFLNRCQD

Query:  PNGGYGGGPGQ
          GGYGGGPGQ
Subjt:  PNGGYGGGPGQ

Arabidopsis top hitse value%identityAlignment
AT5G40280.1 Prenyltransferase family protein3.9e-3659.46Show/hide
Query:  AELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDFLNRCQD
        + LTV+QR Q +VE++V  IY++F  S  + Q++M+E+QR+  ++YL  GL  LGP F  LDANRPW+CYWILHSIALLG++VD ELE+  IDFL RCQ 
Subjt:  AELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDFLNRCQD

Query:  PNGGYGGGPGQ
          GGYGGGPGQ
Subjt:  PNGGYGGGPGQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGCTCCGGCACCGGCGGAGCTTACGGTGACGCAGCGAAATCAAAGGATGGTGGAGTCTGAGGTTGCTCGGATTTACGACTTTTTCTTCCGGTCTCCTCGCACCGC
GCAAGAATTCATGTTGGAGCTTCAACGTGAAAATCATATCGAATATCTTACCAATGGTCTCGATCATCTGGGACCCTCGTTTCGCGTACTGGATGCCAATCGTCCTTGGA
TTTGCTATTGGATTCTGCATTCAATTGCTCTACTGGGAGACTCTGTAGATGCTGAACTGGAGGCTAGGACCATTGACTTTCTTAATCGTTGTCAAGATCCAAATGGTGGA
TATGGAGGTGGACCTGGACAGGCG
mRNA sequenceShow/hide mRNA sequence
ATGGACGCTCCGGCACCGGCGGAGCTTACGGTGACGCAGCGAAATCAAAGGATGGTGGAGTCTGAGGTTGCTCGGATTTACGACTTTTTCTTCCGGTCTCCTCGCACCGC
GCAAGAATTCATGTTGGAGCTTCAACGTGAAAATCATATCGAATATCTTACCAATGGTCTCGATCATCTGGGACCCTCGTTTCGCGTACTGGATGCCAATCGTCCTTGGA
TTTGCTATTGGATTCTGCATTCAATTGCTCTACTGGGAGACTCTGTAGATGCTGAACTGGAGGCTAGGACCATTGACTTTCTTAATCGTTGTCAAGATCCAAATGGTGGA
TATGGAGGTGGACCTGGACAGGCG
Protein sequenceShow/hide protein sequence
MDAPAPAELTVTQRNQRMVESEVARIYDFFFRSPRTAQEFMLELQRENHIEYLTNGLDHLGPSFRVLDANRPWICYWILHSIALLGDSVDAELEARTIDFLNRCQDPNGG
YGGGPGQA