CuGenDBv2

Gene ID	MS016508
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Genome location	scaffold657:304248..304467
RNA-Seq Expression	MS016508
Synteny	MS016508
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0022900 - electron transport chain (biological process) GO:0009522 - photosystem I (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR001280 - Photosystem I PsaA/PsaB IPR036408 - Photosystem I PsaA/PsaB superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

PNT40931.1 hypothetical protein POPTR_004G127600, partial [Populus trichocarpa]

5.3e-17

75.44

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Query:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVNDAVGVTHYILGG
        VW FSL+FLF GC YWQELI+SI WAHNKLKVAPATQP  LSI+  A+ VTHY+LGG
Subjt:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVNDAVGVTHYILGG

RYQ91279.1 hypothetical protein Ahy_B09g097168 isoform A [Arachis hypogaea]

9.0e-17

81.03

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Query:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG
        VW+FSLMFLFSG  YWQELI+SI WAHNKLKVAPATQP  LSIV   AVGVTHY+LGG
Subjt:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG

YP_009681135.1 photosystem I P700 apoprotein A1 [Sagittaria trifolia]

1.2e-16

81.03

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Query:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG
        VW FSLMFLFSG  YWQELI+SI WAHNKLKVAPATQP  LSIV   AVGVTHY+LGG
Subjt:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG

YP_009862964.1 photosystem I P700 apoprotein A1 [Anthoceros punctatus]

9.0e-17

79.31

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Query:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG
        VW FSLMFLFSGC YWQELI+SI WAHNKLKVAPA QP  LSIV   AVGV HY+LGG
Subjt:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG

YP_009863054.1 photosystem I P700 apoprotein A1 [Anthoceros agrestis]

9.0e-17

79.31

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Query:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG
        VW FSLMFLFSGC YWQELI+SI WAHNKLKVAPA QP  LSIV   AVGV HY+LGG
Subjt:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG

TrEMBL top hits

e value

%identity

Alignment

A0A2K2ATR5 Uncharacterized protein (Fragment)

2.6e-17

75.44

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Query:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVNDAVGVTHYILGG
        VW FSL+FLF GC YWQELI+SI WAHNKLKVAPATQP  LSI+  A+ VTHY+LGG
Subjt:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVNDAVGVTHYILGG

A0A444XNJ3 Uncharacterized protein

4.4e-17

81.03

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Query:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG
        VW+FSLMFLFSG  YWQELI+SI WAHNKLKVAPATQP  LSIV   AVGVTHY+LGG
Subjt:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG

A0A481XQM4 Photosystem I P700 chlorophyll a apoprotein A1

5.7e-17

81.03

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Query:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG
        VW FSLMFLFSG  YWQELI+SI WAHNKLKVAPATQP  LSIV   AVGVTHY+LGG
Subjt:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG

A0A6M8B1J4 Photosystem I P700 chlorophyll a apoprotein A1

4.4e-17

79.31

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Query:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG
        VW FSLMFLFSGC YWQELI+SI WAHNKLKVAPA QP  LSIV   AVGV HY+LGG
Subjt:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG

A0A6M8B216 Photosystem I P700 chlorophyll a apoprotein A1

4.4e-17

79.31

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Query:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG
        VW FSLMFLFSGC YWQELI+SI WAHNKLKVAPA QP  LSIV   AVGV HY+LGG
Subjt:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG

SwissProt top hits

e value

%identity

Alignment

A4QJB5 Photosystem I P700 chlorophyll a apoprotein A1

1.5e-19

81.03

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Query:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG
        VW FSLMFLFSG  YWQELI+SI WAHNKLKVAPATQP  LSIV   AVGVTHY+LGG
Subjt:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG

A4QJJ9 Photosystem I P700 chlorophyll a apoprotein A1

1.5e-19

81.03

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Query:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG
        VW FSLMFLFSG  YWQELI+SI WAHNKLKVAPATQP  LSIV   AVGVTHY+LGG
Subjt:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG

A4QK18 Photosystem I P700 chlorophyll a apoprotein A1

1.5e-19

81.03

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Query:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG
        VW FSLMFLFSG  YWQELI+SI WAHNKLKVAPATQP  LSIV   AVGVTHY+LGG
Subjt:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG

Q3V534 Photosystem I P700 chlorophyll a apoprotein A1

1.5e-19

81.03

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Query:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG
        VW FSLMFLFSG  YWQELI+SI WAHNKLKVAPATQP  LSIV   AVGVTHY+LGG
Subjt:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG

Q70Y03 Photosystem I P700 chlorophyll a apoprotein A1

1.5e-19

81.03

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Query:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG
        VW FSLMFLFSG  YWQELI+SI WAHNKLKVAPATQP  LSIV   AVGVTHY+LGG
Subjt:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG

Arabidopsis top hits

e value

%identity

Alignment

ATCG00340.1 Photosystem I, PsaA/PsaB protein

3.4e-06

42.62

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Query:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAP----ATQPGVLSIVN-DAVGVTHYILG
        VW    MFL S   YWQELI+++AWAH +  +A       +P  LSIV    VG+ H+ +G
Subjt:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAP----ATQPGVLSIVN-DAVGVTHYILG

ATCG00350.1 Photosystem I, PsaA/PsaB protein

1.4e-20

79.31

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Query:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG
        VW FSLMFLFSG  YWQELI+SI WAHNKLKVAPATQP  LSI+   AVGVTHY+LGG
Subjt:  VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVND-AVGVTHYILGG

Sequences

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CDS sequence

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GTATGGACTTTTAGTTTAATGTTTCTATTCAGCGGGTGTGATTATTGGCAAGAACTTATTAAATCCATCGCTTGGGCTCATAATAAATTAAAAGTTGCTCCTGCTACTCA
ACCTGGAGTCTTGAGCATTGTCAATGACGCGGTAGGAGTAACCCATTACATTCTGGGAGGAGAAAAGATGGGTGGTATTCATATACTAAGGGAAAATTGTTTTGTCCAC

mRNA sequence

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Protein sequence

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VWTFSLMFLFSGCDYWQELIKSIAWAHNKLKVAPATQPGVLSIVNDAVGVTHYILGGEKMGGIHILRENCFVH

MS016508 (gene) of Bitter gourd (TR) v1 genome