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MS016547 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016547
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L35
Genome locationscaffold1294:23154..23399
RNA-Seq ExpressionMS016547
SyntenyMS016547
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650972.1 hypothetical protein Csa_002588 [Cucumis sativus]1.4e-1869.74Show/hide
Query:  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKSRILSFVKKHFGRRRSK
        R++KI+++AKI  LYIK KAT+K PSG+FQRLL+LDKL+  VDS+S SRILLQ+RR++KSR+LSFVKKH G RRSK
Subjt:  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKSRILSFVKKHFGRRRSK

KAG6596309.1 hypothetical protein SDJN03_09489, partial [Cucurbita argyrosperma subsp. sororia]5.7e-2071.05Show/hide
Query:  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKSRILSFVKKHFGRRRSK
        R+WKIT+ AK++ LYIKFKATVKRPSG+F+ LL LDKL+  +DS+S SRIL+QQ R++KSRI+SFVKKHF RRRSK
Subjt:  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKSRILSFVKKHFGRRRSK

KAG7027863.1 hypothetical protein SDJN02_09040 [Cucurbita argyrosperma subsp. argyrosperma]5.7e-2071.05Show/hide
Query:  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKSRILSFVKKHFGRRRSK
        R+WKIT+ AK++ LYIKFKATVKRPSG+F+ LL LDKL+  +DS+S SRIL+QQ R++KSRI+SFVKKHF RRRSK
Subjt:  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKSRILSFVKKHFGRRRSK

XP_008442323.1 PREDICTED: uncharacterized protein LOC103486229 [Cucumis melo]9.1e-1867.11Show/hide
Query:  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKSRILSFVKKHFGRRRSK
        R++KI++ AKI  LYIK KAT+K PSG+FQRLL+LDKL+  VDS+S SR+L+Q+RR++KSR+LSFVKKH GR RSK
Subjt:  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKSRILSFVKKHFGRRRSK

XP_023540743.1 uncharacterized protein LOC111801019 [Cucurbita pepo subsp. pepo]5.7e-2071.05Show/hide
Query:  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKSRILSFVKKHFGRRRSK
        R+WKIT+ AK++ LYIKFKATVKRPSG+F+ LL LDKL+  +DS+S SRIL+QQ R++KSRI+SFVKKHF RRRSK
Subjt:  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKSRILSFVKKHFGRRRSK

TrEMBL top hitse value%identityAlignment
A0A0A0LCL9 50S ribosomal protein L356.8e-1969.74Show/hide
Query:  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKSRILSFVKKHFGRRRSK
        R++KI+++AKI  LYIK KAT+K PSG+FQRLL+LDKL+  VDS+S SRILLQ+RR++KSR+LSFVKKH G RRSK
Subjt:  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKSRILSFVKKHFGRRRSK

A0A1S3B4Y8 uncharacterized protein LOC1034862294.4e-1867.11Show/hide
Query:  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKSRILSFVKKHFGRRRSK
        R++KI++ AKI  LYIK KAT+K PSG+FQRLL+LDKL+  VDS+S SR+L+Q+RR++KSR+LSFVKKH GR RSK
Subjt:  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKSRILSFVKKHFGRRRSK

A0A5A7TM08 RING-H2 finger protein ATL74-like4.4e-1867.11Show/hide
Query:  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKSRILSFVKKHFGRRRSK
        R++KI++ AKI  LYIK KAT+K PSG+FQRLL+LDKL+  VDS+S SR+L+Q+RR++KSR+LSFVKKH GR RSK
Subjt:  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKSRILSFVKKHFGRRRSK

A0A5D2RE44 Uncharacterized protein1.6e-0444.44Show/hide
Query:  RAWKITIRAKISKLYIKFKATVKRPSGEFQR---LLRLDKLVFRVDSESGSRILL--QQRRSVKSRILSFVKKHFGRRRSK
        ++WK+ I+A+      K KAT   PSGEF R   LLRL K + ++  +SGS + +  QQ+RS KSR LSF++K   RR  K
Subjt:  RAWKITIRAKISKLYIKFKATVKRPSGEFQR---LLRLDKLVFRVDSESGSRILL--QQRRSVKSRILSFVKKHFGRRRSK

A0A5D3DNQ2 50S ribosomal protein L354.4e-1867.11Show/hide
Query:  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKSRILSFVKKHFGRRRSK
        R++KI++ AKI  LYIK KAT+K PSG+FQRLL+LDKL+  VDS+S SR+L+Q+RR++KSR+LSFVKKH GR RSK
Subjt:  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKSRILSFVKKHFGRRRSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGGAAATTCAGGGGCGGGCATGGAAAATCACGATTCGTGCCAAGATCAGTAAGTTGTATATCAAGTTCAAGGCGACCGTAAAACGTCCTTCGGGGGAATTCCAACG
CCTCCTTAGGCTGGATAAATTGGTCTTCAGAGTGGATTCAGAATCCGGATCTCGGATCCTGCTCCAACAAAGAAGGAGTGTGAAATCCCGGATCCTCAGCTTCGTGAAGA
AACATTTCGGGCGCCGCCGATCCAAA
mRNA sequenceShow/hide mRNA sequence
ATGCCGGAAATTCAGGGGCGGGCATGGAAAATCACGATTCGTGCCAAGATCAGTAAGTTGTATATCAAGTTCAAGGCGACCGTAAAACGTCCTTCGGGGGAATTCCAACG
CCTCCTTAGGCTGGATAAATTGGTCTTCAGAGTGGATTCAGAATCCGGATCTCGGATCCTGCTCCAACAAAGAAGGAGTGTGAAATCCCGGATCCTCAGCTTCGTGAAGA
AACATTTCGGGCGCCGCCGATCCAAA
Protein sequenceShow/hide protein sequence
MPEIQGRAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKSRILSFVKKHFGRRRSK