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MS016573 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016573
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGlutamine--tRNA ligase
Genome locationscaffold1294:188911..189216
RNA-Seq ExpressionMS016573
SyntenyMS016573
Gene Ontology termsGO:0006425 - glutaminyl-tRNA aminoacylation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0004819 - glutamine-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR011035 - Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily
IPR020056 - Ribosomal protein L25/Gln-tRNA synthetase, N-terminal
IPR020059 - Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PQQ01037.1 glutamine--tRNA ligase isoform X2 [Prunus yedoensis var. nudiflora]6.7e-3184.21Show/hide
Query:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF
        GVLHWV+EPSPGVDPLKVE+RLFD+LFLS+NPAELDDWL DLNPQSKVVIP A+AVP LR+AVVGD FQFER+G F
Subjt:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF

XP_008243256.1 PREDICTED: glutamine--tRNA ligase [Prunus mume]5.1e-3185.53Show/hide
Query:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF
        GVLHWV+EPSPGVDPLKVEVRLFD+LFLS+NPAELDDWL DLNPQSKVVIP A+AVP LR+AVVGD FQFER+G F
Subjt:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF

XP_022134744.1 glutamine--tRNA ligase [Momordica charantia]2.9e-3494.74Show/hide
Query:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF
        GVLHWV+EPSPGVDPLKVEVRLFDKLFLS+NPAELDDWL DLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIG+F
Subjt:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF

XP_022137631.1 glutamine--tRNA ligase isoform X1 [Momordica charantia]4.6e-3290.79Show/hide
Query:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF
        GVLHWV+EPSPGVDPLKV VRLFDKLFLS+NPAELDDWL DLNPQSKVVIPSAFAVP LRN VVGDAFQFERIG F
Subjt:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF

XP_022137632.1 glutamine--tRNA ligase isoform X2 [Momordica charantia]4.6e-3290.79Show/hide
Query:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF
        GVLHWV+EPSPGVDPLKV VRLFDKLFLS+NPAELDDWL DLNPQSKVVIPSAFAVP LRN VVGDAFQFERIG F
Subjt:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF

TrEMBL top hitse value%identityAlignment
A0A5A7TSC9 Glutamine--tRNA ligase3.2e-3185.53Show/hide
Query:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF
        GVLHWV++PSPGV+PL VEVRLFDKLFLS+NPAELDDWL DLNP SKVVIPSA+AVPELRNAVVGD FQFER+G F
Subjt:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF

A0A5D3BKI5 Glutaminyl-tRNA synthetase3.2e-3185.53Show/hide
Query:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF
        GVLHWV++PSPGV+PL VEVRLFDKLFLS+NPAELDDWL DLNP SKVVIPSA+AVPELRNAVVGD FQFER+G F
Subjt:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF

A0A6J1BZM8 Glutaminyl-tRNA synthetase1.4e-3494.74Show/hide
Query:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF
        GVLHWV+EPSPGVDPLKVEVRLFDKLFLS+NPAELDDWL DLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIG+F
Subjt:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF

A0A6J1C767 glutamine--tRNA ligase isoform X12.2e-3290.79Show/hide
Query:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF
        GVLHWV+EPSPGVDPLKV VRLFDKLFLS+NPAELDDWL DLNPQSKVVIPSAFAVP LRN VVGDAFQFERIG F
Subjt:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF

A0A6J1C8T4 glutamine--tRNA ligase isoform X22.2e-3290.79Show/hide
Query:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF
        GVLHWV+EPSPGVDPLKV VRLFDKLFLS+NPAELDDWL DLNPQSKVVIPSAFAVP LRN VVGDAFQFERIG F
Subjt:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF

SwissProt top hitse value%identityAlignment
A7ZJ63 Glutamine--tRNA ligase2.9e-1351.32Show/hide
Query:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF
        GV+HWVS        L VE+RL+D+LF   NP   DD+L  +NP+S +VI   FA P L++AV G AFQFER G F
Subjt:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF

B7MFU7 Glutamine--tRNA ligase2.9e-1351.32Show/hide
Query:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF
        GV+HWVS        L VE+RL+D+LF   NP   DD+L  +NP+S +VI   FA P L++AV G AFQFER G F
Subjt:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF

B7UKW1 Glutamine--tRNA ligase2.9e-1351.32Show/hide
Query:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF
        GV+HWVS        L VE+RL+D+LF   NP   DD+L  +NP+S +VI   FA P L++AV G AFQFER G F
Subjt:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF

P52780 Glutamine--tRNA ligase3.6e-2772.37Show/hide
Query:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF
        GVLHWVS+PSPGVDPLKVEVRLF++LFLS+NPAELD+WL DLNP SKV I +A+ V  L++A +GD FQFER+G F
Subjt:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF

Q8W4F3 Glutamine--tRNA ligase, cytoplasmic2.8e-2466.23Show/hide
Query:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDD-WLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF
        GVLHWV+E SPG +P+KVEVRLF+KLF S+NPAEL+D WL D+NP SK+VI  A+AV  L++A VGD FQFER+G +
Subjt:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDD-WLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF

Arabidopsis top hitse value%identityAlignment
AT1G25350.1 glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative2.0e-2566.23Show/hide
Query:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDD-WLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF
        GVLHWV+E SPG +P+KVEVRLF+KLF S+NPAEL+D WL D+NP SK+VI  A+AV  L++A VGD FQFER+G +
Subjt:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDD-WLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF

AT1G25350.2 glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative2.0e-2566.23Show/hide
Query:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDD-WLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF
        GVLHWV+E SPG +P+KVEVRLF+KLF S+NPAEL+D WL D+NP SK+VI  A+AV  L++A VGD FQFER+G +
Subjt:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDD-WLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF

AT5G19720.1 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain1.9e-1269.57Show/hide
Query:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAEL-DDWLVDLNPQ
        GVLHWV E SPG +P KVEV  F+ LF S+NPAEL DDWL D+NPQ
Subjt:  GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAEL-DDWLVDLNPQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGGGTCCTACACTGGGTTTCAGAACCTTCTCCAGGAGTTGATCCACTGAAAGTGGAAGTTAGATTGTTCGACAAGCTATTCCTTTCTAAGAATCCTGCTGAACTTGATGA
TTGGCTCGTGGATTTGAACCCACAATCAAAAGTAGTCATTCCGAGTGCTTTTGCTGTACCAGAACTTAGGAATGCTGTTGTAGGAGACGCATTCCAATTTGAAAGGATTG
GTCAGTTT
mRNA sequenceShow/hide mRNA sequence
GGGGTCCTACACTGGGTTTCAGAACCTTCTCCAGGAGTTGATCCACTGAAAGTGGAAGTTAGATTGTTCGACAAGCTATTCCTTTCTAAGAATCCTGCTGAACTTGATGA
TTGGCTCGTGGATTTGAACCCACAATCAAAAGTAGTCATTCCGAGTGCTTTTGCTGTACCAGAACTTAGGAATGCTGTTGTAGGAGACGCATTCCAATTTGAAAGGATTG
GTCAGTTT
Protein sequenceShow/hide protein sequence
GVLHWVSEPSPGVDPLKVEVRLFDKLFLSKNPAELDDWLVDLNPQSKVVIPSAFAVPELRNAVVGDAFQFERIGQF