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MS016598 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016598
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold442:11173..11397
RNA-Seq ExpressionMS016598
SyntenyMS016598
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4349800.1 hypothetical protein F8388_001078 [Cannabis sativa]8.1e-1349.32Show/hide
Query:  AIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH
        A+ N +GE LEV    + E WG F R+RVKL ++KPL RG ++K+    DE WI  RYE+L  FC+ CG +GH
Subjt:  AIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH

KAF4362718.1 hypothetical protein G4B88_018336 [Cannabis sativa]3.1e-1251.43Show/hide
Query:  NKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH
        N +G+ LEV +    E WG F R+RV++ +SKPL RG L+      DELWI  RYE+L  FCY CG+IGH
Subjt:  NKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH

KAF4400882.1 hypothetical protein G4B88_004425 [Cannabis sativa]4.7e-1350Show/hide
Query:  IVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH
        I N +G+ LEV      E WG F R+RV + +SKPL RG ++ +   +DELWI  RYE++L FCY CG+IGH
Subjt:  IVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH

XP_024924622.1 uncharacterized protein LOC112489822 [Ziziphus jujuba]1.4e-1244.74Show/hide
Query:  IAIVNKVGEVLEVEQSQSGEYWGKFARVRVKLH--ISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH
        +AI +++G++L V+  + G  WGK+ RVRV+++  I KPLRRG+L++ +G+ D  W+  +YE+LL FC+ CG++GH
Subjt:  IAIVNKVGEVLEVEQSQSGEYWGKFARVRVKLH--ISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH

XP_030508922.1 uncharacterized protein LOC115723572 [Cannabis sativa]2.1e-1349.32Show/hide
Query:  AIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH
        A+ N +GE LEV    + E WG F R+RVKL ++KPL RG+++K+   +DE WI  RYE+L  FC+ CG +GH
Subjt:  AIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH

TrEMBL top hitse value%identityAlignment
A0A7J6DVQ6 CCHC-type domain-containing protein3.9e-1349.32Show/hide
Query:  AIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH
        A+ N +GE LEV    + E WG F R+RVKL ++KPL RG ++K+    DE WI  RYE+L  FC+ CG +GH
Subjt:  AIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH

A0A7J6I007 Uncharacterized protein2.3e-1350Show/hide
Query:  IVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH
        I N +G+ LEV      E WG F R+RV + +SKPL RG ++ +   +DELWI  RYE++L FCY CG+IGH
Subjt:  IVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH

A0A803P614 Uncharacterized protein3.0e-1347.95Show/hide
Query:  AIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH
        A+ N +GE LEV    + E WG F R+RVKL ++KPL RG ++K+    DE W+  RYE+L  FC+ CG +GH
Subjt:  AIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH

A0A803QHU2 Uncharacterized protein1.0e-1347.95Show/hide
Query:  AIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH
        A+ N +GE LEV    + E WG F R+RVKL ++KPL RG ++K+   +DE W+  RYE+L  FC+ CG +GH
Subjt:  AIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH

A0A803QHU7 Uncharacterized protein5.1e-1347.3Show/hide
Query:  IAIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH
        IA+ N +GE L+V +    E WG F RVRVKL +SKPL+RG ++ ++   D+ W+  RYE+L  +C  CG+IGH
Subjt:  IAIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01050.1 zinc ion binding;nucleic acid binding1.5e-0434.67Show/hide
Query:  LIAIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH
        L+ I   +G  L+V+ +      G+FARV ++++++KPL+  VL  +NG  D  ++   YE L   C  CG+ GH
Subjt:  LIAIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTATTGCTATTGTGAACAAGGTGGGAGAAGTACTGGAGGTGGAGCAGAGTCAAAGCGGTGAATATTGGGGAAAGTTTGCTAGAGTTAGAGTTAAGCTTCACATTTCTAA
ACCTCTACGTAGGGGTGTTTTAATGAAGATGAATGGCAGTGAGGATGAGTTGTGGATTCCACTACGGTATGAAAAATTGCTCGCCTTTTGTTACTTCTGTGGTTTGATTG
GTCAT
mRNA sequenceShow/hide mRNA sequence
CTTATTGCTATTGTGAACAAGGTGGGAGAAGTACTGGAGGTGGAGCAGAGTCAAAGCGGTGAATATTGGGGAAAGTTTGCTAGAGTTAGAGTTAAGCTTCACATTTCTAA
ACCTCTACGTAGGGGTGTTTTAATGAAGATGAATGGCAGTGAGGATGAGTTGTGGATTCCACTACGGTATGAAAAATTGCTCGCCTTTTGTTACTTCTGTGGTTTGATTG
GTCAT
Protein sequenceShow/hide protein sequence
LIAIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH