; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS016608 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016608
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold442:258625..264743
RNA-Seq ExpressionMS016608
SyntenyMS016608
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK17758.1 RNase H domain-containing family protein [Cucumis melo var. makuwa]1.9e-8281.44Show/hide
Query:  DPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLAC-THEKPSASRGKMAEGYSGAKRPHQ-HETVECTYFLEFDGASKGNPGLAGAG
        DPNATIYKGYHLSKEAE+YL SHGLQSATYSISAANVT+DLFGK+L C  +E+PS +RGKMAE Y  A+R  +  +  E TYFLEFDGASKGNPGLAGAG
Subjt:  DPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLAC-THEKPSASRGKMAEGYSGAKRPHQ-HETVECTYFLEFDGASKGNPGLAGAG

Query:  AVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR
        A+LRA DGSTVCRLQEGVGIAT NVAEYRA+ILGLKHALKNG KHI VQGDSKLVCMQVQGLWK+KN NM +LCKVAKELKDKF SFEISH+PR
Subjt:  AVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR

XP_004147444.1 uncharacterized protein LOC101219107 [Cucumis sativus]2.0e-8483.08Show/hide
Query:  FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLAC-THEKPSASRGKMAEGYSGAKRPHQ-HETVECTYFLEFDGASKGNPGLAGA
        FDP+ATIYKGYHLSKEAE+YL +HGLQSATYSISAANVT+DLFGK+L C  +E+PSA+RGKMAE YS A+R  +  E  E TYFLEFDGASKGNPGLAGA
Subjt:  FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLAC-THEKPSASRGKMAEGYSGAKRPHQ-HETVECTYFLEFDGASKGNPGLAGA

Query:  GAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR
        GAVLRA DGSTVC+LQEGVGIAT NVAEYRAVILGLKHALKNG KHIRVQGDSKLVCMQVQGLWK+KNPNM + CKVAKELKDKF SFEISH PR
Subjt:  GAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR

XP_008443477.1 PREDICTED: uncharacterized protein LOC103487060 isoform X1 [Cucumis melo]3.8e-8381.54Show/hide
Query:  FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLAC-THEKPSASRGKMAEGYSGAKRPHQ-HETVECTYFLEFDGASKGNPGLAGA
        FDPNATIYKGYHLSKEAE+YL SHGLQSATYSISAANVT+DLFGK+L C  +E+PS +RGKMAE Y  A+R  +  +  E TYFLEFDGASKGNPGLAGA
Subjt:  FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLAC-THEKPSASRGKMAEGYSGAKRPHQ-HETVECTYFLEFDGASKGNPGLAGA

Query:  GAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR
        GA+LRA DGSTVCRLQEGVGIAT NVAEYRA+ILGLKHALKNG KHI VQGDSKLVCMQVQGLWK+KN NM +LCKVAKELKDKF SFEISH+PR
Subjt:  GAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR

XP_008443478.1 PREDICTED: uncharacterized protein Mb2253c isoform X2 [Cucumis melo]1.9e-8281.44Show/hide
Query:  DPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLAC-THEKPSASRGKMAEGYSGAKRPHQ-HETVECTYFLEFDGASKGNPGLAGAG
        DPNATIYKGYHLSKEAE+YL SHGLQSATYSISAANVT+DLFGK+L C  +E+PS +RGKMAE Y  A+R  +  +  E TYFLEFDGASKGNPGLAGAG
Subjt:  DPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLAC-THEKPSASRGKMAEGYSGAKRPHQ-HETVECTYFLEFDGASKGNPGLAGAG

Query:  AVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR
        A+LRA DGSTVCRLQEGVGIAT NVAEYRA+ILGLKHALKNG KHI VQGDSKLVCMQVQGLWK+KN NM +LCKVAKELKDKF SFEISH+PR
Subjt:  AVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR

XP_022150130.1 uncharacterized protein LOC111018384 [Momordica charantia]8.0e-8961.61Show/hide
Query:  FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLACTHEKP----------------------------------------------
        FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLACT+E+P                                              
Subjt:  FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLACTHEKP----------------------------------------------

Query:  ----------------------------------------SASRGKMAEGYSGAKRPHQHETVEC-------------------------------TYFL
                                                SASRGKMAEGYSGAKRPHQHETVEC                               TYFL
Subjt:  ----------------------------------------SASRGKMAEGYSGAKRPHQHETVEC-------------------------------TYFL

Query:  EFDGASKGNPGLAGAGAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKF
        EFDGASKGNPGLAGAGAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKF
Subjt:  EFDGASKGNPGLAGAGAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKF

Query:  ASFEISHIPR
        ASFEISHIPR
Subjt:  ASFEISHIPR

TrEMBL top hitse value%identityAlignment
A0A0A0LHV8 RNase H domain-containing protein9.9e-8583.08Show/hide
Query:  FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLAC-THEKPSASRGKMAEGYSGAKRPHQ-HETVECTYFLEFDGASKGNPGLAGA
        FDP+ATIYKGYHLSKEAE+YL +HGLQSATYSISAANVT+DLFGK+L C  +E+PSA+RGKMAE YS A+R  +  E  E TYFLEFDGASKGNPGLAGA
Subjt:  FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLAC-THEKPSASRGKMAEGYSGAKRPHQ-HETVECTYFLEFDGASKGNPGLAGA

Query:  GAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR
        GAVLRA DGSTVC+LQEGVGIAT NVAEYRAVILGLKHALKNG KHIRVQGDSKLVCMQVQGLWK+KNPNM + CKVAKELKDKF SFEISH PR
Subjt:  GAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR

A0A1S3B7N6 uncharacterized protein LOC103487060 isoform X11.9e-8381.54Show/hide
Query:  FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLAC-THEKPSASRGKMAEGYSGAKRPHQ-HETVECTYFLEFDGASKGNPGLAGA
        FDPNATIYKGYHLSKEAE+YL SHGLQSATYSISAANVT+DLFGK+L C  +E+PS +RGKMAE Y  A+R  +  +  E TYFLEFDGASKGNPGLAGA
Subjt:  FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLAC-THEKPSASRGKMAEGYSGAKRPHQ-HETVECTYFLEFDGASKGNPGLAGA

Query:  GAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR
        GA+LRA DGSTVCRLQEGVGIAT NVAEYRA+ILGLKHALKNG KHI VQGDSKLVCMQVQGLWK+KN NM +LCKVAKELKDKF SFEISH+PR
Subjt:  GAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR

A0A1S3B845 uncharacterized protein Mb2253c isoform X29.2e-8381.44Show/hide
Query:  DPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLAC-THEKPSASRGKMAEGYSGAKRPHQ-HETVECTYFLEFDGASKGNPGLAGAG
        DPNATIYKGYHLSKEAE+YL SHGLQSATYSISAANVT+DLFGK+L C  +E+PS +RGKMAE Y  A+R  +  +  E TYFLEFDGASKGNPGLAGAG
Subjt:  DPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLAC-THEKPSASRGKMAEGYSGAKRPHQ-HETVECTYFLEFDGASKGNPGLAGAG

Query:  AVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR
        A+LRA DGSTVCRLQEGVGIAT NVAEYRA+ILGLKHALKNG KHI VQGDSKLVCMQVQGLWK+KN NM +LCKVAKELKDKF SFEISH+PR
Subjt:  AVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR

A0A5D3D2K9 RNase H domain-containing family protein9.2e-8381.44Show/hide
Query:  DPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLAC-THEKPSASRGKMAEGYSGAKRPHQ-HETVECTYFLEFDGASKGNPGLAGAG
        DPNATIYKGYHLSKEAE+YL SHGLQSATYSISAANVT+DLFGK+L C  +E+PS +RGKMAE Y  A+R  +  +  E TYFLEFDGASKGNPGLAGAG
Subjt:  DPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLAC-THEKPSASRGKMAEGYSGAKRPHQ-HETVECTYFLEFDGASKGNPGLAGAG

Query:  AVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR
        A+LRA DGSTVCRLQEGVGIAT NVAEYRA+ILGLKHALKNG KHI VQGDSKLVCMQVQGLWK+KN NM +LCKVAKELKDKF SFEISH+PR
Subjt:  AVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR

A0A6J1D7M4 uncharacterized protein LOC1110183843.9e-8961.61Show/hide
Query:  FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLACTHEKP----------------------------------------------
        FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLACT+E+P                                              
Subjt:  FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLACTHEKP----------------------------------------------

Query:  ----------------------------------------SASRGKMAEGYSGAKRPHQHETVEC-------------------------------TYFL
                                                SASRGKMAEGYSGAKRPHQHETVEC                               TYFL
Subjt:  ----------------------------------------SASRGKMAEGYSGAKRPHQHETVEC-------------------------------TYFL

Query:  EFDGASKGNPGLAGAGAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKF
        EFDGASKGNPGLAGAGAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKF
Subjt:  EFDGASKGNPGLAGAGAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKF

Query:  ASFEISHIPR
        ASFEISHIPR
Subjt:  ASFEISHIPR

SwissProt top hitse value%identityAlignment
P54162 14.7 kDa ribonuclease H-like protein9.7e-0530.84Show/hide
Query:  DGASKGNPGLAGAGAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFAS
        DGAS GNPG +G G  ++ +  +    +   +G+ TN  AE+ A+I G+K     G++ +  + DS +V  +   L  +KN       +    LK  F  
Subjt:  DGASKGNPGLAGAGAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFAS

Query:  FEISHIP
        F I  IP
Subjt:  FEISHIP

P64956 Uncharacterized protein Mb2253c5.9e-1845.54Show/hide
Query:  LEFDGASKGNPGLAGAGAVLRAKDGSTV-CRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKD
        +E DG S+GNPG AG GAV+   D STV    ++ +G ATNNVAEYR +I GL  A+K G     V  DSKLV  Q+ G WK+K+P++ +L   A+ L  
Subjt:  LEFDGASKGNPGLAGAGAVLRAKDGSTV-CRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKD

Query:  KFASFEISHIPR
        +F       +PR
Subjt:  KFASFEISHIPR

P9WLH4 Uncharacterized protein MT22875.9e-1845.54Show/hide
Query:  LEFDGASKGNPGLAGAGAVLRAKDGSTV-CRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKD
        +E DG S+GNPG AG GAV+   D STV    ++ +G ATNNVAEYR +I GL  A+K G     V  DSKLV  Q+ G WK+K+P++ +L   A+ L  
Subjt:  LEFDGASKGNPGLAGAGAVLRAKDGSTV-CRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKD

Query:  KFASFEISHIPR
        +F       +PR
Subjt:  KFASFEISHIPR

P9WLH5 Bifunctional protein Rv2228c5.9e-1845.54Show/hide
Query:  LEFDGASKGNPGLAGAGAVLRAKDGSTV-CRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKD
        +E DG S+GNPG AG GAV+   D STV    ++ +G ATNNVAEYR +I GL  A+K G     V  DSKLV  Q+ G WK+K+P++ +L   A+ L  
Subjt:  LEFDGASKGNPGLAGAGAVLRAKDGSTV-CRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKD

Query:  KFASFEISHIPR
        +F       +PR
Subjt:  KFASFEISHIPR

Q9HSF6 Ribonuclease HI6.5e-1744.04Show/hide
Query:  FDGASKGNPGLAGAGAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFA
        FDGAS+GNPG A  G VL + DG  V    + +G ATNN AEY A+I  L+ A   GF  I ++GDS+LV  Q+ G W   +P++ +    A+EL   F 
Subjt:  FDGASKGNPGLAGAGAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFA

Query:  SFEISHIPR
         + I+H+PR
Subjt:  SFEISHIPR

Arabidopsis top hitse value%identityAlignment
AT1G24090.1 RNase H family protein4.3e-4843.38Show/hide
Query:  FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLACTHEKPSASRGKMAEGYSGAKRPHQHETVEC---------------------
        FD   ++YKGY L K+ E+YL+S GL+   YS+ A+++ +D+FG L  C  ++P+    K++E  + ++   + +  +                      
Subjt:  FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLACTHEKPSASRGKMAEGYSGAKRPHQHETVEC---------------------

Query:  -----TYFLEFDGASKGNPGLAGAGAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCK
             T F+EFDGASKGNPGL+GA AVL+ +DGS +CR+++G+GIATNN AEY A+ILGLK+A++ G+K+I+V+GDSKLVCMQ++G WK+ +  + +L K
Subjt:  -----TYFLEFDGASKGNPGLAGAGAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCK

Query:  VAKELKDKFASFEISHIPR
         AK L +K  SFEISH+ R
Subjt:  VAKELKDKFASFEISHIPR

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.9e-4946.29Show/hide
Query:  PNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLACTHEKPSASRGK-------------MAEGYSGAKRPHQ----------------
        P  ++YKGY   K AE  L+S G+++A +S++A++V +D FGKL+ C  ++PS+S+G+             M  G SG+  P                  
Subjt:  PNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLACTHEKPSASRGK-------------MAEGYSGAKRPHQ----------------

Query:  ---------HETVECTYFLEFDGASKGNPGLAGAGAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKI
                  +   CT  +EFDGASKGNPG AGAGAVLRA D S +  L+EGVG ATNNVAEYRA++LGL+ AL  GFK++ V GDS LVCMQVQG WK 
Subjt:  ---------HETVECTYFLEFDGASKGNPGLAGAGAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKI

Query:  KNPNMGQLCKVAKELKDKFASFEISHIPR
         +P M +LCK AKEL + F +F+I HI R
Subjt:  KNPNMGQLCKVAKELKDKFASFEISHIPR

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.9e-4946.29Show/hide
Query:  PNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLACTHEKPSASRGK-------------MAEGYSGAKRPHQ----------------
        P  ++YKGY   K AE  L+S G+++A +S++A++V +D FGKL+ C  ++PS+S+G+             M  G SG+  P                  
Subjt:  PNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLACTHEKPSASRGK-------------MAEGYSGAKRPHQ----------------

Query:  ---------HETVECTYFLEFDGASKGNPGLAGAGAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKI
                  +   CT  +EFDGASKGNPG AGAGAVLRA D S +  L+EGVG ATNNVAEYRA++LGL+ AL  GFK++ V GDS LVCMQVQG WK 
Subjt:  ---------HETVECTYFLEFDGASKGNPGLAGAGAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKI

Query:  KNPNMGQLCKVAKELKDKFASFEISHIPR
         +P M +LCK AKEL + F +F+I HI R
Subjt:  KNPNMGQLCKVAKELKDKFASFEISHIPR

AT5G51080.1 RNase H family protein1.2e-4547.72Show/hide
Query:  FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLACTHEK--PSASRG--KMAEGYSGAKRPHQHETVECTYFLEFDGASKGNPGLA
        +DP  ++YKGY L K+ E+ L++ GL+   Y   A ++ ED+FG L  C  +   PSAS    K+AE    A   ++      T  +EFDGASKGNPGL+
Subjt:  FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLACTHEK--PSASRG--KMAEGYSGAKRPHQHETVECTYFLEFDGASKGNPGLA

Query:  GAGAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR
        GA AVL+ +DGS + ++++G+GIATNN AEY  +ILGLKHA++ G+  I+V+ DSKLVCMQ++G WK+ +  + +L K AK+L DK  SFEISH+ R
Subjt:  GAGAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR

AT5G51080.2 RNase H family protein1.2e-4547.72Show/hide
Query:  FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLACTHEK--PSASRG--KMAEGYSGAKRPHQHETVECTYFLEFDGASKGNPGLA
        +DP  ++YKGY L K+ E+ L++ GL+   Y   A ++ ED+FG L  C  +   PSAS    K+AE    A   ++      T  +EFDGASKGNPGL+
Subjt:  FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLACTHEK--PSASRG--KMAEGYSGAKRPHQHETVECTYFLEFDGASKGNPGLA

Query:  GAGAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR
        GA AVL+ +DGS + ++++G+GIATNN AEY  +ILGLKHA++ G+  I+V+ DSKLVCMQ++G WK+ +  + +L K AK+L DK  SFEISH+ R
Subjt:  GAGAVLRAKDGSTVCRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTGATCCCAATGCAACGATCTACAAAGGGTATCACTTATCTAAAGAAGCAGAGCAGTACCTTGCGTCACATGGACTTCAGAGTGCGACTTACTCTATAAGTGCTGCCAA
TGTGACAGAGGATTTATTTGGCAAACTACTTGCTTGCACTCATGAGAAACCATCTGCTTCTAGAGGAAAAATGGCTGAAGGTTACTCTGGAGCTAAGAGACCGCATCAAC
ATGAGACTGTTGAATGTACCTATTTTCTTGAGTTTGATGGTGCCTCAAAGGGGAATCCTGGGCTAGCAGGTGCTGGAGCTGTTTTACGTGCTAAAGATGGATCTACAGTC
TGTAGGTTGCAAGAAGGGGTTGGGATCGCTACAAATAATGTTGCGGAATATCGTGCTGTAATTTTAGGACTTAAACATGCTCTTAAGAATGGCTTTAAACACATTCGTGT
CCAAGGAGATTCCAAGCTCGTTTGTATGCAGGTTCAGGGTCTGTGGAAGATCAAAAACCCAAATATGGGTCAGTTGTGTAAAGTGGCAAAGGAGCTCAAGGATAAGTTTG
CATCATTTGAGATCAGTCATATCCCTAGG
mRNA sequenceShow/hide mRNA sequence
TTTGATCCCAATGCAACGATCTACAAAGGGTATCACTTATCTAAAGAAGCAGAGCAGTACCTTGCGTCACATGGACTTCAGAGTGCGACTTACTCTATAAGTGCTGCCAA
TGTGACAGAGGATTTATTTGGCAAACTACTTGCTTGCACTCATGAGAAACCATCTGCTTCTAGAGGAAAAATGGCTGAAGGTTACTCTGGAGCTAAGAGACCGCATCAAC
ATGAGACTGTTGAATGTACCTATTTTCTTGAGTTTGATGGTGCCTCAAAGGGGAATCCTGGGCTAGCAGGTGCTGGAGCTGTTTTACGTGCTAAAGATGGATCTACAGTC
TGTAGGTTGCAAGAAGGGGTTGGGATCGCTACAAATAATGTTGCGGAATATCGTGCTGTAATTTTAGGACTTAAACATGCTCTTAAGAATGGCTTTAAACACATTCGTGT
CCAAGGAGATTCCAAGCTCGTTTGTATGCAGGTTCAGGGTCTGTGGAAGATCAAAAACCCAAATATGGGTCAGTTGTGTAAAGTGGCAAAGGAGCTCAAGGATAAGTTTG
CATCATTTGAGATCAGTCATATCCCTAGG
Protein sequenceShow/hide protein sequence
FDPNATIYKGYHLSKEAEQYLASHGLQSATYSISAANVTEDLFGKLLACTHEKPSASRGKMAEGYSGAKRPHQHETVECTYFLEFDGASKGNPGLAGAGAVLRAKDGSTV
CRLQEGVGIATNNVAEYRAVILGLKHALKNGFKHIRVQGDSKLVCMQVQGLWKIKNPNMGQLCKVAKELKDKFASFEISHIPR