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MS016610 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016610
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein FAR1-RELATED SEQUENCE
Genome locationscaffold442:278978..279118
RNA-Seq ExpressionMS016610
SyntenyMS016610
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR004330 - FAR1 DNA binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAE5977506.1 unnamed protein product [Arabidopsis arenosa]5.3e-1063.83Show/hide
Query:  QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN
        QPI+R GCK  +TC L +  +YK+VSFN+NHNHDLV+TPMK++LK N
Subjt:  QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN

CAE6000663.1 unnamed protein product [Arabidopsis arenosa]5.3e-1063.83Show/hide
Query:  QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN
        QPI+R GCK  +TC L +  +YK+VSFN+NHNHDLV+TPMK++LK N
Subjt:  QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN

CAE6011084.1 unnamed protein product [Arabidopsis arenosa]5.3e-1063.83Show/hide
Query:  QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN
        QPI+R GCK  +TC L +  +YK+VSFN+NHNHDLV+TPMK++LK N
Subjt:  QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN

EOA25092.1 hypothetical protein CARUB_v10018400mg [Capsella rubella]3.1e-1065.96Show/hide
Query:  QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN
        QPI+R GC   +TC L KN +YK+VSF  NHNHDLVRTPMK+++KVN
Subjt:  QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN

XP_010456530.1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Camelina sativa]4.0e-1063.83Show/hide
Query:  QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN
        QPI+R GC   +TC L KN++YK+VSF +NHNHDLVRTPMK++L+ N
Subjt:  QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN

TrEMBL top hitse value%identityAlignment
A0A397Y1R8 Protein FAR1-RELATED SEQUENCE3.7e-0959.57Show/hide
Query:  QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN
        +PI+R GCK  + C L  + +Y++VSFN+NHNHDLVRTPMK++LK N
Subjt:  QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN

R0EZH3 Protein FAR1-RELATED SEQUENCE1.6e-0963.83Show/hide
Query:  QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN
        QPI+R GC   +TC L K+ +YK+VSF  NHNHDLVRTPMK++LK N
Subjt:  QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN

R0FR95 Protein FAR1-RELATED SEQUENCE1.5e-1065.96Show/hide
Query:  QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN
        QPI+R GC   +TC L KN +YK+VSF  NHNHDLVRTPMK+++KVN
Subjt:  QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN

V4KG79 Protein FAR1-RELATED SEQUENCE (Fragment)9.7e-1063.83Show/hide
Query:  QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN
        QPI+R GCK  +TC L K  +YK+VSF+ NHNHDLV+TPMK++LK N
Subjt:  QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN

V4LV71 Protein FAR1-RELATED SEQUENCE (Fragment)4.8e-0961.7Show/hide
Query:  QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN
        QPI+R GCK  +TC L K  ++K+VSF+ NHNHDLV TPMK++LK N
Subjt:  QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAACCAATTTCTAGGATTGGATGCAAAGTGCAAATAACATGCTTACTTGGAAAGAATGATCAATATAAAGTTGTCTCTTTTAATAGAAATCATAATCATGACCTTGTTAG
AACACCAATGAAGTATATTTTAAAAGTCAAC
mRNA sequenceShow/hide mRNA sequence
CAACCAATTTCTAGGATTGGATGCAAAGTGCAAATAACATGCTTACTTGGAAAGAATGATCAATATAAAGTTGTCTCTTTTAATAGAAATCATAATCATGACCTTGTTAG
AACACCAATGAAGTATATTTTAAAAGTCAAC
Protein sequenceShow/hide protein sequence
QPISRIGCKVQITCLLGKNDQYKVVSFNRNHNHDLVRTPMKYILKVN