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MS016633 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016633
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold587:76038..76217
RNA-Seq ExpressionMS016633
SyntenyMS016633
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6574163.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]6.3e-1677.59Show/hide
Query:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE
        +KGNEFT  +VLKACSL  NLELGKQIHGI LVTGFE DV+VA+ LVVMYAKCGEF +
Subjt:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE

KAG7013217.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]6.3e-1677.59Show/hide
Query:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE
        +KGNEFT  +VLKACSL  NLELGKQIHGI LVTGFE DV+VA+ LVVMYAKCGEF +
Subjt:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE

XP_022968412.1 pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like [Cucurbita maxima]2.8e-1679.31Show/hide
Query:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE
        VKGNEFT  +VLKACSL  NLELGKQIHGI LVTGFE DV+VA+ LVVMYAKCGEF +
Subjt:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE

XP_023541133.1 pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like [Cucurbita pepo subsp. pepo]2.8e-1679.31Show/hide
Query:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE
        VKGNEFT  +VLKACSL  NLELGKQIHGI LVTGFE DV+VA+ LVVMYAKCGEF +
Subjt:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE

XP_038875950.1 pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like [Benincasa hispida]2.2e-1677.59Show/hide
Query:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE
        VKGNEFT  +VLKACSL  +LELGKQIHG+ LVTGFE DV+VA+ LVVMYAKCGEFG+
Subjt:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE

TrEMBL top hitse value%identityAlignment
A0A5A7ST23 Pentatricopeptide repeat-containing protein5.2e-1675.86Show/hide
Query:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE
        VKGNEFT  +VLK CSL  NLELGKQIHG+ LVTGFE D +VA+ LVVMYAKCGEFG+
Subjt:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE

A0A5D3DF24 Pentatricopeptide repeat-containing protein5.2e-1675.86Show/hide
Query:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE
        VKGNEFT  +VLK CSL  NLELGKQIHG+ LVTGFE D +VA+ LVVMYAKCGEFG+
Subjt:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE

A0A6J1CJH8 pentatricopeptide repeat-containing protein At5g04780-like isoform X15.2e-1677.59Show/hide
Query:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE
        VKGNEFT  +VLKAC L  +LELGKQIHGI LVTGFE DV+VA+ LVVMYAKCGEFG+
Subjt:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE

A0A6J1CK65 pentatricopeptide repeat-containing protein At5g04780-like isoform X25.2e-1677.59Show/hide
Query:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE
        VKGNEFT  +VLKAC L  +LELGKQIHGI LVTGFE DV+VA+ LVVMYAKCGEFG+
Subjt:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE

A0A6J1HTF6 pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like1.4e-1679.31Show/hide
Query:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE
        VKGNEFT  +VLKACSL  NLELGKQIHGI LVTGFE DV+VA+ LVVMYAKCGEF +
Subjt:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE

SwissProt top hitse value%identityAlignment
P0C898 Putative pentatricopeptide repeat-containing protein At3g151301.7e-0854.55Show/hide
Query:  NEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE
        NEFT    LKAC L++ LE G QIHG  L  GFE  V V ++LV MY+KCG   E
Subjt:  NEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE

Q7XJN6 Pentatricopeptide repeat-containing protein At2g407201.3e-0853.06Show/hide
Query:  FTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCG
        FT  ++LKACS ++NL  GK IHG V+V G+ +D ++A++LV MY KCG
Subjt:  FTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCG

Q9FI80 Pentatricopeptide repeat-containing protein At5g489108.5e-0851.85Show/hide
Query:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCG
        V+ N FT  +VLKAC+    ++ GKQIHG+ L  GF  D +V SNLV MY  CG
Subjt:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCG

Q9LZ19 Pentatricopeptide repeat-containing protein At5g04780, mitochondrial1.5e-0747.37Show/hide
Query:  NEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGEVY
        N+FT  +V+ ACS ++ L  GKQ+H ++  +GF  +V+VAS+ V MYAKCG   E Y
Subjt:  NEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGEVY

Q9SB36 Pentatricopeptide repeat-containing protein At4g25270, chloroplastic5.0e-0849.09Show/hide
Query:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGE
        VK + FT   VLKAC  + ++++G+ IH  ++  GF +DVYV + LVVMYAKCG+
Subjt:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGE

Arabidopsis top hitse value%identityAlignment
AT2G40720.1 Tetratricopeptide repeat (TPR)-like superfamily protein9.3e-1053.06Show/hide
Query:  FTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCG
        FT  ++LKACS ++NL  GK IHG V+V G+ +D ++A++LV MY KCG
Subjt:  FTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCG

AT3G15130.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.2e-0954.55Show/hide
Query:  NEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE
        NEFT    LKAC L++ LE G QIHG  L  GFE  V V ++LV MY+KCG   E
Subjt:  NEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGE

AT4G25270.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.5e-0949.09Show/hide
Query:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGE
        VK + FT   VLKAC  + ++++G+ IH  ++  GF +DVYV + LVVMYAKCG+
Subjt:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGE

AT5G04780.1 Pentatricopeptide repeat (PPR) superfamily protein1.0e-0847.37Show/hide
Query:  NEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGEVY
        N+FT  +V+ ACS ++ L  GKQ+H ++  +GF  +V+VAS+ V MYAKCG   E Y
Subjt:  NEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGEVY

AT5G48910.1 Pentatricopeptide repeat (PPR) superfamily protein6.0e-0951.85Show/hide
Query:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCG
        V+ N FT  +VLKAC+    ++ GKQIHG+ L  GF  D +V SNLV MY  CG
Subjt:  VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGAAGGGCAATGAGTTCACTTCCCATAATGTTTTAAAAGCATGTTCTTTGATGAGTAACTTGGAATTGGGGAAGCAAATTCATGGAATTGTTTTAGTTACTGGTTTTGA
GTTTGATGTATATGTTGCTAGCAATTTGGTCGTTATGTATGCAAAATGTGGGGAGTTTGGTGAAGTATAT
mRNA sequenceShow/hide mRNA sequence
GTGAAGGGCAATGAGTTCACTTCCCATAATGTTTTAAAAGCATGTTCTTTGATGAGTAACTTGGAATTGGGGAAGCAAATTCATGGAATTGTTTTAGTTACTGGTTTTGA
GTTTGATGTATATGTTGCTAGCAATTTGGTCGTTATGTATGCAAAATGTGGGGAGTTTGGTGAAGTATAT
Protein sequenceShow/hide protein sequence
VKGNEFTSHNVLKACSLMSNLELGKQIHGIVLVTGFEFDVYVASNLVVMYAKCGEFGEVY