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MS016645 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016645
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA-directed DNA polymerase, eukaryota, reverse transcriptase zinc-binding domain protein
Genome locationscaffold587:363659..363826
RNA-Seq ExpressionMS016645
SyntenyMS016645
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEZ75543.1 putative RNA-directed DNA polymerase, eukaryota, reverse transcriptase zinc-binding domain protein [Tanacetum cinerariifolium]2.7e-0557.14Show/hide
Query:  KFKCKLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDFF
        KF  KL KWK   LS GG   L +SVL +L +YYFSL KAP +VI T+EKY   FF
Subjt:  KFKCKLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDFF

PWA80255.1 reverse transcriptase domain, Reverse transcriptase zinc-binding domain protein [Artemisia annua]2.5e-0653.57Show/hide
Query:  KFKCKLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDFF
        KFK +LC+WK   +S GG L L +SVL +L LYYFS+ + PL V K +E+  KDFF
Subjt:  KFKCKLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDFF

XP_023732081.1 uncharacterized protein LOC111879881 [Lactuca sativa]1.6e-0553.57Show/hide
Query:  KFKCKLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDFF
        KF+ +L KWK  NLS GG L L + VL++L  +YFS+ KAP+ VIKT+EK    FF
Subjt:  KFKCKLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDFF

XP_023741688.1 uncharacterized protein LOC111889765 [Lactuca sativa]2.1e-0553.57Show/hide
Query:  KFKCKLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDFF
        KF+ +L KWK  NLS GG L L + VL +L  +YFS+ KAP+ VIKT+EK    FF
Subjt:  KFKCKLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDFF

XP_026409970.1 uncharacterized protein LOC113305077 [Papaver somniferum]9.3e-0650.91Show/hide
Query:  KFKCKLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDF
        KF  +L  W+  +LSKGG L+L + +L++L  YYFSL KAP+SVIK +EK +++F
Subjt:  KFKCKLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDF

TrEMBL top hitse value%identityAlignment
A0A2U1KZ82 Reverse transcriptase domain, Reverse transcriptase zinc-binding domain protein5.0e-0550.91Show/hide
Query:  FKCKLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDFF
        F+ +L +WK  +LS GG + L +SVL+NL  YYFSL KAP+SVI  ++   K FF
Subjt:  FKCKLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDFF

A0A2U1P3B3 Reverse transcriptase domain, Reverse transcriptase zinc-binding domain protein1.2e-0653.57Show/hide
Query:  KFKCKLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDFF
        KFK +LC+WK   +S GG L L +SVL +L LYYFS+ + PL V K +E+  KDFF
Subjt:  KFKCKLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDFF

A0A803PW65 Uncharacterized protein8.5e-0553.57Show/hide
Query:  KC--KLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDFF
        KC  +L  WK   LS+GG L L QSVL++L +YY SL KAP  V+K +EK ++DFF
Subjt:  KC--KLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDFF

A0A803PZS1 Uncharacterized protein6.5e-0555.36Show/hide
Query:  KC--KLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDFF
        KC  +L  WK   LS+GG L L QSVL++L +YY SL KAP  VIK +EK ++DFF
Subjt:  KC--KLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDFF

A0A803QI00 Uncharacterized protein6.5e-0553.57Show/hide
Query:  KC--KLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDFF
        KC  +L  WK   LS+GG LIL QSVL++L +YY SL KAP  V++ +EK ++DFF
Subjt:  KC--KLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDFF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAATTCAAATGCAAGCTATGCAAATGGAAAATTTTCAACCTATCCAAAGGGGGGTGCCTAATCTTGGCTCAATCAGTGCTTAATAACTTACATCTCTATTATTTTTCTTT
GTTGAAAGCCCCTCTTTCTGTAATCAAAACAATGGAAAAATATGTGAAAGACTTTTTT
mRNA sequenceShow/hide mRNA sequence
AAATTCAAATGCAAGCTATGCAAATGGAAAATTTTCAACCTATCCAAAGGGGGGTGCCTAATCTTGGCTCAATCAGTGCTTAATAACTTACATCTCTATTATTTTTCTTT
GTTGAAAGCCCCTCTTTCTGTAATCAAAACAATGGAAAAATATGTGAAAGACTTTTTT
Protein sequenceShow/hide protein sequence
KFKCKLCKWKIFNLSKGGCLILAQSVLNNLHLYYFSLLKAPLSVIKTMEKYVKDFF