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MS016680 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016680
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDynein light chain
Genome locationscaffold563:55065..56012
RNA-Seq ExpressionMS016680
SyntenyMS016680
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8518956.1 hypothetical protein F0562_016270 [Nyssa sinensis]2.2e-4378.5Show/hide
Query:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE
        MLEGKAV+RETDMPE +QSHV+ELAY+ALD HE SDCQSIA +IKQ+FDEAYGPAWHCVVGK FG CITHLCGSFIFF VD+MEFL+FKDG+D ++S EE
Subjt:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE

Query:  TLGVRQK
         +GV QK
Subjt:  TLGVRQK

KGN58830.1 hypothetical protein Csa_001625 [Cucumis sativus]1.3e-4887.85Show/hide
Query:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE
        MLEGKAVVRETDMP+GIQSHVLELAYKALD HEVSDCQSIA FIKQRFDEAYGPAWHCV GKAFGGCITHLCGS+IFFHVD MEFL+FKDGRD  KS+EE
Subjt:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE

Query:  TLGVRQK
        T+GV +K
Subjt:  TLGVRQK

PON90790.1 Dynein light chain [Trema orientale]2.6e-4478.7Show/hide
Query:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE
        MLEGKAVVRETDMPE +QSHV+ELAYKALD HEVSDCQSIA +IKQ+FDE YGPAW+CVVGK FG CITHLCGSFIFFHV++MEFLIFKDG+DF+++++E
Subjt:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE

Query:  TLGVRQKS
         +GV QK+
Subjt:  TLGVRQKS

XP_008442502.1 PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo]1.2e-4989.72Show/hide
Query:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE
        MLEGKAVVRETDMP+GIQSHVLELAYKALD HEVSDCQSIA FIKQRFDEAYGPAWHCV GKAFGGCITHLCGSFIFFHVD MEFL+FKDGRD SKS+EE
Subjt:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE

Query:  TLGVRQK
        T+GV +K
Subjt:  TLGVRQK

XP_022145583.1 dynein light chain-like [Momordica charantia]1.9e-5599.07Show/hide
Query:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE
        MLEGKA VRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE
Subjt:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE

Query:  TLGVRQKS
        TLGVRQKS
Subjt:  TLGVRQKS

TrEMBL top hitse value%identityAlignment
A0A0A0LA26 Dynein light chain6.4e-4987.85Show/hide
Query:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE
        MLEGKAVVRETDMP+GIQSHVLELAYKALD HEVSDCQSIA FIKQRFDEAYGPAWHCV GKAFGGCITHLCGS+IFFHVD MEFL+FKDGRD  KS+EE
Subjt:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE

Query:  TLGVRQK
        T+GV +K
Subjt:  TLGVRQK

A0A1S3B5U2 Dynein light chain5.8e-5089.72Show/hide
Query:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE
        MLEGKAVVRETDMP+GIQSHVLELAYKALD HEVSDCQSIA FIKQRFDEAYGPAWHCV GKAFGGCITHLCGSFIFFHVD MEFL+FKDGRD SKS+EE
Subjt:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE

Query:  TLGVRQK
        T+GV +K
Subjt:  TLGVRQK

A0A2P5EZ32 Dynein light chain1.2e-4478.7Show/hide
Query:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE
        MLEGKAVVRETDMPE +QSHV+ELAYKALD HEVSDCQSIA +IKQ+FDE YGPAW+CVVGK FG CITHLCGSFIFFHV++MEFLIFKDG+DF+++++E
Subjt:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE

Query:  TLGVRQKS
         +GV QK+
Subjt:  TLGVRQKS

A0A5J4ZMN8 Dynein light chain1.1e-4378.5Show/hide
Query:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE
        MLEGKAV+RETDMPE +QSHV+ELAY+ALD HE SDCQSIA +IKQ+FDEAYGPAWHCVVGK FG CITHLCGSFIFF VD+MEFL+FKDG+D ++S EE
Subjt:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE

Query:  TLGVRQK
         +GV QK
Subjt:  TLGVRQK

A0A6J1CWC6 Dynein light chain9.2e-5699.07Show/hide
Query:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE
        MLEGKA VRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE
Subjt:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEE

Query:  TLGVRQKS
        TLGVRQKS
Subjt:  TLGVRQKS

SwissProt top hitse value%identityAlignment
O02414 Dynein light chain LC6, flagellar outer arm4.4e-1540.66Show/hide
Query:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDG
        M E KAV++  DMPE +Q   ++ A +AL+   +   + IA +IK+ FD+ Y P WHC+VG+ FG  +TH    FI+F++  +  L+FK G
Subjt:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDG

O96860 Dynein light chain 2, cytoplasmic1.7e-1439.56Show/hide
Query:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDG
        M + KAV++  DM E +Q   ++ A +AL+ + +   + IA FIK+ FD+ Y P WHC+VG+ FG  +TH    FI+F++  +  L+FK G
Subjt:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDG

Q22799 Dynein light chain 1, cytoplasmic2.2e-1437.36Show/hide
Query:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDG
        M++ KAV++  DM + +Q   ++ A +AL+ + +   + IA +IK+ FD+ Y P WHC+VG+ FG  +TH    FI+F++  +  L+FK G
Subjt:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDG

Q94748 Probable dynein light chain3.4e-1542.86Show/hide
Query:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDG
        M E KAV++  DM E +Q   +  A  ALD +E+   + +A +IK+ FD  Y P WHC+VGK FG  +TH    FI+F++    FL+FK G
Subjt:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDG

Q94758 Dynein light chain1.5e-1542.86Show/hide
Query:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDG
        M E KAV++  DM E +Q   + +A  A+D H++   + IA  IK+ FD  Y P WHC+VG+ FG  +TH   +FI+F++D   FL+FK G
Subjt:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDG

Arabidopsis top hitse value%identityAlignment
AT1G52240.2 RHO guanyl-nucleotide exchange factor 119.5e-2151.69Show/hide
Query:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFK
        MLEGKA+V ++DMP  +Q   +  A +ALD  +V DC+SIA  IK+ FDE YG  W CVVG  FG   TH  G+FI+F ++ ++FLIFK
Subjt:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFK

AT3G16120.1 Dynein light chain type 1 family protein3.6e-2052.81Show/hide
Query:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFK
        MLEGKA V ETDMP  +Q   +++A ++LD  +V D  SIA  IK+ FDE YG  W CVVG  FG   TH  G+FI+FH+  + FLIFK
Subjt:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFK

AT4G15930.1 Dynein light chain type 1 family protein3.9e-1436.78Show/hide
Query:  KAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDG
        +AV++  DM + +Q   +E+A  A + + V   + IA  IK+ FD+ +G  WHC+VG+ FG  +TH    F++F++D    L+FK G
Subjt:  KAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDG

AT4G27360.1 Dynein light chain type 1 family protein4.0e-1949.44Show/hide
Query:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFK
        MLEGKAV+ +TDM + ++   L LA KALD  +V++   IARFIK+ FD +YG  W C+VG  FG  +TH  G FI F V  +  L+FK
Subjt:  MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFK

AT5G20110.1 Dynein light chain type 1 family protein1.7e-1443.59Show/hide
Query:  DMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFK
        DMP  +Q+H    A   LD  E    + +A  +K+ FD+ YGPAWHC+VG +FG  +TH  G FI+F +D +  L+FK
Subjt:  DMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAGGGCAAAGCTGTGGTCCGCGAAACAGACATGCCAGAGGGGATCCAGAGCCATGTCCTTGAGTTGGCTTATAAAGCACTTGATCATCACGAAGTTTCCGACTG
TCAATCCATTGCCCGTTTTATCAAACAGAGATTTGACGAAGCTTATGGCCCGGCATGGCACTGTGTTGTGGGAAAAGCTTTTGGAGGTTGCATTACACATTTGTGTGGGA
GTTTCATCTTCTTCCATGTGGATATAATGGAGTTTCTCATCTTCAAGGACGGAAGAGACTTCTCCAAAAGCATTGAAGAAACCTTAGGAGTGCGCCAGAAAAGT
mRNA sequenceShow/hide mRNA sequence
ATGTTGGAGGGCAAAGCTGTGGTCCGCGAAACAGACATGCCAGAGGGGATCCAGAGCCATGTCCTTGAGTTGGCTTATAAAGCACTTGATCATCACGAAGTTTCCGACTG
TCAATCCATTGCCCGTTTTATCAAACAGAGATTTGACGAAGCTTATGGCCCGGCATGGCACTGTGTTGTGGGAAAAGCTTTTGGAGGTTGCATTACACATTTGTGTGGGA
GTTTCATCTTCTTCCATGTGGATATAATGGAGTTTCTCATCTTCAAGGACGGAAGAGACTTCTCCAAAAGCATTGAAGAAACCTTAGGAGTGCGCCAGAAAAGT
Protein sequenceShow/hide protein sequence
MLEGKAVVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVVGKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEETLGVRQKS