; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS016725 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016725
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationscaffold563:354092..355369
RNA-Seq ExpressionMS016725
SyntenyMS016725
Gene Ontology termsGO:0009416 - response to light stimulus (biological process)
GO:0009768 - photosynthesis, light harvesting in photosystem I (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
InterPro domainsIPR001344 - Chlorophyll A-B binding protein, plant and chromista
IPR022796 - Chlorophyll A-B binding protein
IPR023329 - Chlorophyll a/b binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3448904.1 hypothetical protein FNV43_RR09620 [Rhamnella rubrinervis]3.1e-12681.98Show/hide
Query:  SVAAASSFIGIRLPVV--PPGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVAS
        + A ASSF+G RLP V    GRV  +      KK  P K + KP +DRPLWYPGA APEWLDGSLVGDYGFDPFG GKPAEYLQF+LDSLDQNLAKN+A 
Subjt:  SVAAASSFIGIRLPVV--PPGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVAS

Query:  DVIGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRN
        DVIGT FENADVKS PFQPY+EVFGLQRFRECEL+HGRWAMLA +GAL+VEWLTG+TWQDAGKVELVEGSSYLGQPLPFSI+TLIWIE+L+IGYIEFQRN
Subjt:  DVIGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRN

Query:  AELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS
        AELDPEKRLYPGGK+FDPL LAADPEK ATLQ AEIKHA LAMVAFL F VQAAATGKGPLNNWATHLSDPLHTTI DTFSSS
Subjt:  AELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS

KAF8032029.1 hypothetical protein BT93_D1050 [Corymbia citriodora subsp. variegata]4.1e-12682.56Show/hide
Query:  SVAAASSFIGIRLPVVP-PGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASD
        + AAASSFIG RLP VP  GRV  +    +  K   PK+A+K  SDRPLWYPGA APEWLDGSLVGDYGFDPFG GKPAEYLQFDLDSLDQNLAKN A D
Subjt:  SVAAASSFIGIRLPVVP-PGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASD

Query:  VIGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNA
        +IGT FENADVKS PFQPY+EVFGLQRFRECEL+HGRWAMLA +GAL+VEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI+ LIWIE+++IGYIEFQRNA
Subjt:  VIGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNA

Query:  ELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS
        ELDPEKRLYPGGK+FDPL LAADPEK A LQ AEIKHA LAMVAFL F VQAAATGKGPLNNWATHLSDPLHTTIIDTF+S
Subjt:  ELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS

XP_010037701.1 chlorophyll a-b binding protein CP29.1, chloroplastic [Eucalyptus grandis]4.1e-12682.21Show/hide
Query:  SVAAASSFIGIRLPVVP-PGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASD
        + AAASSFIG RLP VP  GRV  +    +  K   PK+A+K  SDRPLWYPGA APEWLDGSLVGDYGFDPFG GKPAEYLQFDLDSLDQNLAKN A D
Subjt:  SVAAASSFIGIRLPVVP-PGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASD

Query:  VIGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNA
        +IGT FEN+DVKS PFQPY+EVFGLQRFRECEL+HGRWAMLA +GAL+VEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI+ LIWIE+++IGYIEFQRN 
Subjt:  VIGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNA

Query:  ELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS
        ELDPEKRLYPGGK+FDPL LAADPEK ATLQ AEIKHA LAMVAFL F VQAAATGKGPLNNWATHLSDPLHTTIIDTF+S
Subjt:  ELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS

XP_022151483.1 chlorophyll a-b binding protein CP29.1, chloroplastic [Momordica charantia]3.7e-12781.91Show/hide
Query:  SVAAASSFIGIRLPVVPPGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDV
        + AA SSFIG RLP V P     +      KK   PK++SK ISDRPLW+PGA APEWLDGSLVGDYGFDPFG GKPAEYLQ+DLDSLDQNLAKNVA D+
Subjt:  SVAAASSFIGIRLPVVPPGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDV

Query:  IGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNAE
        IGT FEN+DVKS PFQPY+EVFGLQRFRECEL+HGRWAMLA +GALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI+TLIWIE+L+IGYIEFQRNAE
Subjt:  IGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNAE

Query:  LDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS
        LDPEKRLYPGGK+FDPL LA DPEK A LQ AEIKHA LAMVAFL F VQAA TGKGPLNNWATHLSDPLHTTIID+FSSSS
Subjt:  LDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS

XP_038904041.1 chlorophyll a-b binding protein CP29.1, chloroplastic-like [Benincasa hispida]8.0e-13084.34Show/hide
Query:  AAASSFIGIRLPVVPPGRVGCKPDSHSIKKDIPPKRAS-KPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVI
        AAASSFIG RLPV P G    +      K+  PPK++S KP+SDRPLW+PGA+APEWLDGSLVGDYGFDPFG GKPAEYLQFDLDSLDQNLAKNVA DVI
Subjt:  AAASSFIGIRLPVVPPGRVGCKPDSHSIKKDIPPKRAS-KPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVI

Query:  GTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNAEL
        GT FENADVKS PFQPYSEVFGLQRFRECEL+HGRWAMLA +GAL+VEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIE+L+IGYIEFQRN EL
Subjt:  GTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNAEL

Query:  DPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS
        DPEKRLYPGGKYFDPL LAADPEK  TLQ AEIKHA LAMVAFL F VQAAATGKGPLNNWATHLSDPLHTTIIDT   SS
Subjt:  DPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS

TrEMBL top hitse value%identityAlignment
A0A059A742 Chlorophyll a-b binding protein, chloroplastic2.0e-12682.21Show/hide
Query:  SVAAASSFIGIRLPVVP-PGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASD
        + AAASSFIG RLP VP  GRV  +    +  K   PK+A+K  SDRPLWYPGA APEWLDGSLVGDYGFDPFG GKPAEYLQFDLDSLDQNLAKN A D
Subjt:  SVAAASSFIGIRLPVVP-PGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASD

Query:  VIGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNA
        +IGT FEN+DVKS PFQPY+EVFGLQRFRECEL+HGRWAMLA +GAL+VEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI+ LIWIE+++IGYIEFQRN 
Subjt:  VIGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNA

Query:  ELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS
        ELDPEKRLYPGGK+FDPL LAADPEK ATLQ AEIKHA LAMVAFL F VQAAATGKGPLNNWATHLSDPLHTTIIDTF+S
Subjt:  ELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS

A0A6A1WHK8 Chlorophyll a-b binding protein, chloroplastic8.3e-12581.56Show/hide
Query:  SVAAASSFIGIRLPVV--PPGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVAS
        + AA SSF+G RL  V    GRV  +      KK  P K + KP +DRPLWYPGA APEWLDGSLVGDYGFDPFG GKPAEYLQFDLDSLDQNLAKN+A 
Subjt:  SVAAASSFIGIRLPVV--PPGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVAS

Query:  DVIGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRN
        DVIGT FE++DVKS PFQPYSEVFGLQRFRECEL+HGRWAMLA +GAL+VEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI+ LIWIE+L+IGYIEFQRN
Subjt:  DVIGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRN

Query:  AELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS
        AELDPEKRLYPGGKYFDPL LA+DPEK ATLQ AEIKHA LAMVAFL F VQAAATGKGPLNNWATHLSDPLHTTIIDTF+S
Subjt:  AELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS

A0A6J1DCA5 Chlorophyll a-b binding protein, chloroplastic1.8e-12781.91Show/hide
Query:  SVAAASSFIGIRLPVVPPGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDV
        + AA SSFIG RLP V P     +      KK   PK++SK ISDRPLW+PGA APEWLDGSLVGDYGFDPFG GKPAEYLQ+DLDSLDQNLAKNVA D+
Subjt:  SVAAASSFIGIRLPVVPPGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDV

Query:  IGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNAE
        IGT FEN+DVKS PFQPY+EVFGLQRFRECEL+HGRWAMLA +GALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI+TLIWIE+L+IGYIEFQRNAE
Subjt:  IGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNAE

Query:  LDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS
        LDPEKRLYPGGK+FDPL LA DPEK A LQ AEIKHA LAMVAFL F VQAA TGKGPLNNWATHLSDPLHTTIID+FSSSS
Subjt:  LDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS

A0A7J7HME2 Chlorophyll a-b binding protein, chloroplastic1.9e-12480Show/hide
Query:  SVAAASSFIGIRLPVVPPGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDV
        S AA SSFIG R P V  G    +       K  P K+ +KP SDRPLW+PGA APEWLDG+LVGDYGFDPFG GKPAEYLQF+LDSLDQNLAKN+A D+
Subjt:  SVAAASSFIGIRLPVVPPGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDV

Query:  IGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNAE
        IGT FE+ADVKS PFQPYSEVFGLQRFRECEL+HGRWAMLA +GAL+VEWLTG+TWQDAGKVEL+EGSSYLGQPLPFSI+TLIWIE+L+IGYIEFQRN+E
Subjt:  IGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNAE

Query:  LDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS
        LDPEKRLYPGGKYFDPL LA+DPEK ATLQ AEIKHA LAM+AFL F VQAAATGKGPLNNWATHLSDPLHTTIIDTF S
Subjt:  LDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS

B9SQ36 Chlorophyll a-b binding protein, chloroplastic3.2e-12481.21Show/hide
Query:  SVAAASSFIGIRLPVV--PPGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVAS
        + AAASSF+G RLP V    GRV  +    +  K   PKR++KP SDRPLWYPGA APEWLDGSLVGDYGFDPFG GKPAEYLQF+LDSLDQNLAKN+A 
Subjt:  SVAAASSFIGIRLPVV--PPGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVAS

Query:  DVIGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRN
        D+IGT  E ADVKS PFQPYSEVFGLQRFRECEL+HGRWAMLA +GAL+VEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI+TLIWIE+L+IGYIEFQRN
Subjt:  DVIGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRN

Query:  AELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS
        +ELDPEKRLYPGGK+FDPL LA DPEK ATLQ AEIKHA LAMVAFL F VQAA TGKGPLNNWATHLSDPLHTTIID FSS
Subjt:  AELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS

SwissProt top hitse value%identityAlignment
Q01667 Chlorophyll a-b binding protein 6, chloroplastic1.4e-3339.57Show/hide
Query:  WYPGAIAPEWLDGSLVGDYGFDPFGGKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKSPFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEW
        W PG   P +LDGS  GD+GFDP G          L  +  N                               L+R++E EL+H RWAMLA  G L  E 
Subjt:  WYPGAIAPEWLDGSLVGDYGFDPFGGKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKSPFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEW

Query:  LTGVTWQDAGKVELVEG--SSYLGQPLPF-SISTLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSF
        L    W  A +   + G  ++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG  FDPL  + DP+K   L+  EIK+  LA++AF+ F
Subjt:  LTGVTWQDAGKVELVEG--SSYLGQPLPF-SISTLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSF

Query:  VVQAAA-TGKGPLNNWATHLSDPLHTTIID
         VQ +A  G GPL N ATHL+DP H  I D
Subjt:  VVQAAA-TGKGPLNNWATHLSDPLHTTIID

Q07473 Chlorophyll a-b binding protein CP29.1, chloroplastic8.8e-12479.23Show/hide
Query:  SVAAASSFIGIRL-PVVPPGRVGCKPDSHSIKKDIPPKRASKP--ISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVA
        + AAASS +G R+ P + PG           KK   PK+++K    +DRPLWYPGAI+P+WLDGSLVGDYGFDPFG GKPAEYLQFD+DSLDQNLAKN+A
Subjt:  SVAAASSFIGIRL-PVVPPGRVGCKPDSHSIKKDIPPKRASKP--ISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVA

Query:  SDVIGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQR
         DVIGT  E AD KS PFQPYSEVFG+QRFRECEL+HGRWAMLA +GALSVEWLTGVTWQDAGKVELV+GSSYLGQPLPFSISTLIWIE+L+IGYIEFQR
Subjt:  SDVIGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQR

Query:  NAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS
        NAELD EKRLYPGGK+FDPL LAADPEK A LQ AEIKHA LAMVAFL F VQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS
Subjt:  NAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS

Q93WD2 Chlorophyll a-b binding protein CP291.4e-6056.16Show/hide
Query:  LWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDV---IGTWFENADVKSPFQPYSEVFGLQRFRECELVHGRWAMLAAIGA
        LW P    PEWLDGSL GD GFDP G  KP+E++   +D  DQN AKN    V   +    +    ++   PYSEVFGL RFRECEL+HGRWAMLA +GA
Subjt:  LWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDV---IGTWFENADVKSPFQPYSEVFGLQRFRECELVHGRWAMLAAIGA

Query:  LSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAA-DPEKAATLQFAEIKHACLAMVAF
        L  E  TGV+W +AGKVEL +G+SY G  LPFSI+ LIWIE++++G  EF RN+E +PEKR YPGG  FDPL LA+ D E+A  L+ AEIKHA LAMV+F
Subjt:  LSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAA-DPEKAATLQFAEIKHACLAMVAF

Query:  LSFVVQAAATGKGPLNNWA
          + VQA +TG+G L + A
Subjt:  LSFVVQAAATGKGPLNNWA

Q9S7W1 Chlorophyll a-b binding protein CP29.3, chloroplastic4.1e-9766.67Show/hide
Query:  SVAAASSFIGIRL--PVVPPGRVGCK-PDSHSIKKDIPPKRASKPI---SDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAK
        + AAAS   GIR+  P    GRV  +   S   KK  PP + S+ +    DR +W+PGA  PEWLDGS++GD GFDPFG GKPAEYLQ+D D LDQNLAK
Subjt:  SVAAASSFIGIRL--PVVPPGRVGCK-PDSHSIKKDIPPKRASKPI---SDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAK

Query:  NVASDVIGTWFENADVK-SPFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIE
        NVA D+IG   E++++K +PFQPY+EVFG+QRFRECEL+HGRWAML  +GA++VE LTG+ WQDAGKVELVEGSSYLGQPLPFS++TLIWIE+L++GYIE
Subjt:  NVASDVIGTWFENADVK-SPFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIE

Query:  FQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWAT
        FQRN+ELDPEKR+YPGG YFDPL LAADPEK  TL+ AEIKH+ LAMVAFL F +QAA TGKGP++  AT
Subjt:  FQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWAT

Q9XF88 Chlorophyll a-b binding protein CP29.2, chloroplastic1.2e-11783.2Show/hide
Query:  KDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKS-PFQPYSEVFGLQRFRECE
        K   PK+A   ISDRPLW+PGA +PE+LDGSLVGDYGFDPFG GKPAEYLQFDLDSLDQNLAKN+  +VIGT  E  D KS PFQPYSEVFGLQRFRECE
Subjt:  KDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKS-PFQPYSEVFGLQRFRECE

Query:  LVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQF
        L+HGRWAMLA +GA++VEWLTGVTWQDAGKVELV+GSSYLGQPLPFSISTLIWIE+L+IGYIEFQRNAELD EKRLYPGGK+FDPL LA+DP K A LQ 
Subjt:  LVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQF

Query:  AEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS
        AEIKHA LAMV FL F VQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS
Subjt:  AEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS

Arabidopsis top hitse value%identityAlignment
AT2G40100.1 light harvesting complex photosystem II2.9e-9866.67Show/hide
Query:  SVAAASSFIGIRL--PVVPPGRVGCK-PDSHSIKKDIPPKRASKPI---SDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAK
        + AAAS   GIR+  P    GRV  +   S   KK  PP + S+ +    DR +W+PGA  PEWLDGS++GD GFDPFG GKPAEYLQ+D D LDQNLAK
Subjt:  SVAAASSFIGIRL--PVVPPGRVGCK-PDSHSIKKDIPPKRASKPI---SDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAK

Query:  NVASDVIGTWFENADVK-SPFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIE
        NVA D+IG   E++++K +PFQPY+EVFG+QRFRECEL+HGRWAML  +GA++VE LTG+ WQDAGKVELVEGSSYLGQPLPFS++TLIWIE+L++GYIE
Subjt:  NVASDVIGTWFENADVK-SPFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIE

Query:  FQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWAT
        FQRN+ELDPEKR+YPGG YFDPL LAADPEK  TL+ AEIKH+ LAMVAFL F +QAA TGKGP++  AT
Subjt:  FQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWAT

AT2G40100.2 light harvesting complex photosystem II5.4e-5260.36Show/hide
Query:  SVAAASSFIGIRL--PVVPPGRVGCK-PDSHSIKKDIPPKRASKPI---SDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAK
        + AAAS   GIR+  P    GRV  +   S   KK  PP + S+ +    DR +W+PGA  PEWLDGS++GD GFDPFG GKPAEYLQ+D D LDQNLAK
Subjt:  SVAAASSFIGIRL--PVVPPGRVGCK-PDSHSIKKDIPPKRASKPI---SDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAK

Query:  NVASDVIGTWFENADVK-SPFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVE
        NVA D+IG   E++++K +PFQPY+EVFG+QRFRECEL+HGRWAML  +GA++VE LTG+ WQDAGKVE
Subjt:  NVASDVIGTWFENADVK-SPFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVE

AT3G08940.1 light harvesting complex photosystem II3.3e-5774.66Show/hide
Query:  KDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKS-PFQPYSEVFGLQRFRECE
        K   PK+A   ISDRPLW+PGA +PE+LDGSLVGDYGFDPFG GKPAEYLQFDLDSLDQNLAKN+  +VIGT  E  D KS PFQPYSEVFGLQRFRECE
Subjt:  KDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKS-PFQPYSEVFGLQRFRECE

Query:  LVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF
        L+HGRWAMLA +GA++VEWLTGVTWQDAGKV  +  SS L   L F
Subjt:  LVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF

AT3G08940.2 light harvesting complex photosystem II8.8e-11983.2Show/hide
Query:  KDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKS-PFQPYSEVFGLQRFRECE
        K   PK+A   ISDRPLW+PGA +PE+LDGSLVGDYGFDPFG GKPAEYLQFDLDSLDQNLAKN+  +VIGT  E  D KS PFQPYSEVFGLQRFRECE
Subjt:  KDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKS-PFQPYSEVFGLQRFRECE

Query:  LVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQF
        L+HGRWAMLA +GA++VEWLTGVTWQDAGKVELV+GSSYLGQPLPFSISTLIWIE+L+IGYIEFQRNAELD EKRLYPGGK+FDPL LA+DP K A LQ 
Subjt:  LVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQF

Query:  AEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS
        AEIKHA LAMV FL F VQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS
Subjt:  AEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS

AT5G01530.1 light harvesting complex photosystem II6.3e-12579.23Show/hide
Query:  SVAAASSFIGIRL-PVVPPGRVGCKPDSHSIKKDIPPKRASKP--ISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVA
        + AAASS +G R+ P + PG           KK   PK+++K    +DRPLWYPGAI+P+WLDGSLVGDYGFDPFG GKPAEYLQFD+DSLDQNLAKN+A
Subjt:  SVAAASSFIGIRL-PVVPPGRVGCKPDSHSIKKDIPPKRASKP--ISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVA

Query:  SDVIGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQR
         DVIGT  E AD KS PFQPYSEVFG+QRFRECEL+HGRWAMLA +GALSVEWLTGVTWQDAGKVELV+GSSYLGQPLPFSISTLIWIE+L+IGYIEFQR
Subjt:  SDVIGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQR

Query:  NAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS
        NAELD EKRLYPGGK+FDPL LAADPEK A LQ AEIKHA LAMVAFL F VQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS
Subjt:  NAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGCGTGGCTGCTGCATCCTCCTTCATTGGGATTCGCCTCCCCGTTGTCCCTCCAGGTCGGGTTGGGTGCAAGCCCGATTCTCATTCGATAAAAAAAGATATCCCACCAAA
GAGAGCATCAAAACCCATCTCCGATCGTCCACTGTGGTACCCGGGAGCCATAGCACCCGAGTGGCTCGACGGTAGCTTGGTGGGTGATTATGGGTTTGACCCATTTGGTG
GCAAACCAGCAGAATACCTACAGTTCGACTTGGACTCTTTGGACCAGAACTTGGCTAAGAATGTCGCCAGTGATGTGATCGGTACCTGGTTTGAGAATGCAGATGTGAAA
TCGCCGTTCCAGCCATACAGTGAGGTATTTGGGTTGCAGAGGTTCCGTGAGTGCGAGCTCGTCCATGGAAGGTGGGCTATGTTGGCCGCGATCGGTGCTCTCTCGGTCGA
GTGGCTCACCGGTGTTACTTGGCAAGACGCTGGAAAGGTAGAGCTGGTGGAAGGATCCTCATATCTTGGGCAGCCACTTCCATTCTCCATATCGACATTGATATGGATCG
AAATTCTGATGATTGGGTACATTGAGTTCCAGAGAAACGCCGAGCTTGACCCAGAGAAGAGACTTTACCCCGGGGGCAAGTACTTCGATCCACTCTGCCTAGCAGCCGAT
CCCGAGAAGGCAGCAACACTTCAATTTGCAGAGATCAAGCACGCTTGCCTCGCTATGGTTGCATTCCTCAGCTTTGTTGTTCAGGCTGCTGCCACTGGCAAAGGCCCGCT
CAATAACTGGGCGACTCACTTGAGTGACCCACTCCACACCACCATTATTGACACATTCTCTTCATCCTCT
mRNA sequenceShow/hide mRNA sequence
AGCGTGGCTGCTGCATCCTCCTTCATTGGGATTCGCCTCCCCGTTGTCCCTCCAGGTCGGGTTGGGTGCAAGCCCGATTCTCATTCGATAAAAAAAGATATCCCACCAAA
GAGAGCATCAAAACCCATCTCCGATCGTCCACTGTGGTACCCGGGAGCCATAGCACCCGAGTGGCTCGACGGTAGCTTGGTGGGTGATTATGGGTTTGACCCATTTGGTG
GCAAACCAGCAGAATACCTACAGTTCGACTTGGACTCTTTGGACCAGAACTTGGCTAAGAATGTCGCCAGTGATGTGATCGGTACCTGGTTTGAGAATGCAGATGTGAAA
TCGCCGTTCCAGCCATACAGTGAGGTATTTGGGTTGCAGAGGTTCCGTGAGTGCGAGCTCGTCCATGGAAGGTGGGCTATGTTGGCCGCGATCGGTGCTCTCTCGGTCGA
GTGGCTCACCGGTGTTACTTGGCAAGACGCTGGAAAGGTAGAGCTGGTGGAAGGATCCTCATATCTTGGGCAGCCACTTCCATTCTCCATATCGACATTGATATGGATCG
AAATTCTGATGATTGGGTACATTGAGTTCCAGAGAAACGCCGAGCTTGACCCAGAGAAGAGACTTTACCCCGGGGGCAAGTACTTCGATCCACTCTGCCTAGCAGCCGAT
CCCGAGAAGGCAGCAACACTTCAATTTGCAGAGATCAAGCACGCTTGCCTCGCTATGGTTGCATTCCTCAGCTTTGTTGTTCAGGCTGCTGCCACTGGCAAAGGCCCGCT
CAATAACTGGGCGACTCACTTGAGTGACCCACTCCACACCACCATTATTGACACATTCTCTTCATCCTCT
Protein sequenceShow/hide protein sequence
SVAAASSFIGIRLPVVPPGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFGGKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVK
SPFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAAD
PEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS