; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS016729 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016729
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem I assembly protein Ycf3
Genome locationscaffold563:462530..462661
RNA-Seq ExpressionMS016729
SyntenyMS016729
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
GO:0009579 - thylakoid (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV83948.1 TPR_11 domain-containing protein, partial [Cephalotus follicularis]1.1e-0463.64Show/hide
Query:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI
        S I   + LI   N EH K LEYYFR LKRN FLPQ FNN+VVI
Subjt:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI

QFQ47800.1 hypothetical chloroplast RF34 [Anerincleistus bracteatus]1.4e-0465.79Show/hide
Query:  VDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI
        + LI  RN EH K LEYYFR L+RN FLPQ FNN+ VI
Subjt:  VDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI

XP_007162373.1 hypothetical protein PHAVU_001G146500g [Phaseolus vulgaris]3.6e-0568.42Show/hide
Query:  VDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI
        +DLI   N+EH K LEYYFRTL+RNSFL + FNN+VVI
Subjt:  VDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI

YP_009869365.1 photosystem I assembly protein Ycf3 [Allium polyrhizum]1.4e-0463.64Show/hide
Query:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI
        S I   + LI   N EH K LEYYFR L+RN FLPQ FNNIVVI
Subjt:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI

YP_009913639.1 photosystem I P700 chlorophyll a apoprotein A2 [Luffa acutangula]1.4e-0465.79Show/hide
Query:  VDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI
        + LI  RN EH K LEYYFR L+RN FLPQ FNN+ VI
Subjt:  VDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI

TrEMBL top hitse value%identityAlignment
A0A1Q3CV61 TPR_11 domain-containing protein (Fragment)5.1e-0563.64Show/hide
Query:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI
        S I   + LI   N EH K LEYYFR LKRN FLPQ FNN+VVI
Subjt:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI

A0A218KG30 Photosystem I assembly protein Ycf38.8e-0561.36Show/hide
Query:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI
        S I   + LI  RN EH K LEYYFR L+RN FLPQ FNN+ VI
Subjt:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI

A0A6B9TUJ8 Photosystem I assembly protein Ycf38.8e-0561.36Show/hide
Query:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI
        S I   + LI  RN EH K LEYYFR L+RN FLPQ FNN+ VI
Subjt:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI

A0A6M8TS85 Photosystem I assembly protein Ycf36.7e-0563.64Show/hide
Query:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI
        S I   + LI   N EH K LEYYFR L+RN FLPQ FNNIVVI
Subjt:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI

V7CW13 Uncharacterized protein1.8e-0568.42Show/hide
Query:  VDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI
        +DLI   N+EH K LEYYFRTL+RNSFL + FNN+VVI
Subjt:  VDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI

SwissProt top hitse value%identityAlignment
A7M967 Photosystem I assembly protein Ycf32.4e-0761.36Show/hide
Query:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI
        S I   + LI   N EHMK LEYYFR L+RN FLPQ FNN+ VI
Subjt:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI

A8W3C5 Photosystem I assembly protein Ycf32.4e-0761.36Show/hide
Query:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI
        S I   + LI   N EHMK LEYYFR L+RN FLPQ FNN+ VI
Subjt:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI

Q06RC8 Photosystem I assembly protein Ycf33.1e-0761.36Show/hide
Query:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI
        S I   + LI   N EH K LEYYFR L+RNSFLPQ FNN+ VI
Subjt:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI

Q09X16 Photosystem I assembly protein Ycf32.4e-0761.36Show/hide
Query:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI
        S I   + LI  RN EH K LEYYFR L+RN FLPQ FNN+ VI
Subjt:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI

Q4VZH4 Photosystem I assembly protein Ycf32.4e-0761.36Show/hide
Query:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI
        S I   + LI  RN EH K LEYYFR L+RN FLPQ FNN+ VI
Subjt:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI

Arabidopsis top hitse value%identityAlignment
ATCG00360.1 Tetratricopeptide repeat (TPR)-like superfamily protein8.4e-0859.09Show/hide
Query:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI
        S I   + LI   N EH K LEYYFR L+RN FLPQ FNN+ VI
Subjt:  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCAATTATATATCTATATGTCGATCTTATTGACATAAGAAATGACGAACATATGAAAGTTTTGGAATATTATTTTCGGACACTAAAGCGAAACTCGTTCTTACCACAAAC
TTTTAATAATATAGTTGTAATA
mRNA sequenceShow/hide mRNA sequence
TCAATTATATATCTATATGTCGATCTTATTGACATAAGAAATGACGAACATATGAAAGTTTTGGAATATTATTTTCGGACACTAAAGCGAAACTCGTTCTTACCACAAAC
TTTTAATAATATAGTTGTAATA
Protein sequenceShow/hide protein sequence
SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI